7QO6
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth a] | SCOP2 Family | Proteasome subunits | 8106857 | 4002254 | SCOP2 (2022-06-29) |
A [auth a] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106858 | 3000131 | SCOP2 (2022-06-29) |
O [auth A] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106858 | 3000131 | SCOP2B (2022-06-29) |
L [auth l] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106868 | 3000131 | SCOP2B (2022-06-29) |
Z [auth 5] | SCOP2 Family | Proteasome subunits | 8106867 | 4002254 | SCOP2 (2022-06-29) |
Z [auth 5] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106868 | 3000131 | SCOP2 (2022-06-29) |
AA [auth 6] | SCOP2 Family | Proteasome subunits | 8106859 | 4002254 | SCOP2 (2022-06-29) |
AA [auth 6] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106860 | 3000131 | SCOP2 (2022-06-29) |
M [auth m] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106860 | 3000131 | SCOP2B (2022-06-29) |
FA [auth X] | SCOP2 Family | PRU domain-like | 8106849 | 4005018 | SCOP2 (2022-06-29) |
FA [auth X] | SCOP2 Superfamily | PH domain-like | 8106850 | 3000134 | SCOP2 (2022-06-29) |
GA [auth Y] | SCOP2B Superfamily | DSS1/SEM1 protein family | 8053395 | 3002183 | SCOP2B (2022-06-29) |
B [auth b] | SCOP2 Family | Proteasome subunits | 8106873 | 4002254 | SCOP2 (2022-06-29) |
B [auth b] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106874 | 3000131 | SCOP2 (2022-06-29) |
P [auth B] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106874 | 3000131 | SCOP2B (2022-06-29) |
NA [auth U] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053272 | 3001105 | SCOP2B (2022-06-29) |
NA [auth U] | SCOP2B Superfamily | EIF3 subunit F C-terminal domain-like | 8053273 | 3002167 | SCOP2B (2022-06-29) |
C [auth c] | SCOP2 Family | Proteasome subunits | 8106851 | 4002254 | SCOP2 (2022-06-29) |
C [auth c] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106852 | 3000131 | SCOP2 (2022-06-29) |
Q [auth C] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106852 | 3000131 | SCOP2B (2022-06-29) |
VA [auth 8] | SCOP2 Family | USP domain-like | 8106855 | 4003158 | SCOP2 (2022-06-29) |
VA [auth 8] | SCOP2 Superfamily | Cysteine proteinases | 8106856 | 3001808 | SCOP2 (2022-06-29) |
WA [auth 9] | SCOP2B Superfamily | Ubiquitin-like | 8104287 | 3000157 | SCOP2B (2022-06-29) |
D [auth d] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106862 | 3000131 | SCOP2B (2022-06-29) |
R [auth D] | SCOP2 Family | Proteasome subunits | 8106861 | 4002254 | SCOP2 (2022-06-29) |
R [auth D] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106862 | 3000131 | SCOP2 (2022-06-29) |
E [auth e] | SCOP2 Family | Proteasome subunits | 8106853 | 4002254 | SCOP2 (2022-06-29) |
E [auth e] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106854 | 3000131 | SCOP2 (2022-06-29) |
S [auth E] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106854 | 3000131 | SCOP2B (2022-06-29) |
F [auth f] | SCOP2 Family | Proteasome subunits | 8106847 | 4002254 | SCOP2 (2022-06-29) |
F [auth f] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106848 | 3000131 | SCOP2 (2022-06-29) |
T [auth F] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106848 | 3000131 | SCOP2B (2022-06-29) |
G [auth g] | SCOP2 Family | Proteasome subunits | 8106865 | 4002254 | SCOP2 (2022-06-29) |
G [auth g] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106866 | 3000131 | SCOP2 (2022-06-29) |
U [auth G] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106866 | 3000131 | SCOP2B (2022-06-29) |
H [auth h] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8036787 | 3000131 | SCOP2B (2022-06-29) |
V [auth 1] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8036787 | 3000131 | SCOP2B (2022-06-29) |
I [auth i] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8106864 | 3000131 | SCOP2B (2022-06-29) |
W [auth 2] | SCOP2 Family | Proteasome subunits | 8106863 | 4002254 | SCOP2 (2022-06-29) |
W [auth 2] | SCOP2 Superfamily | Class II glutamine amidotransferases | 8106864 | 3000131 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth a] | PF00227,PF10584 | e7qo6a1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
O [auth A] | PF00227,PF10584 | e7qo6A1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
J [auth j] | PF00227 | e7qo6j1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
X [auth 3] | PF00227 | e7qo631 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
K [auth k] | PF00227 | e7qo6k1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
Y [auth 4] | PF00227 | e7qo641 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
L [auth l] | PF00227 | e7qo6l1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
Z [auth 5] | PF00227 | e7qo651 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
AA [auth 6] | PF00227 | e7qo661 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
M [auth m] | PF00227 | e7qo6m1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
BA [auth 7] | PF00227 | e7qo671 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
N [auth n] | PF00227 | e7qo6n1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
CA [auth W] | PF13519 | e7qo6W1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF13519 | ECOD (1.6) |
DA [auth V] | PF01398 | e7qo6V1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
DA [auth V] | F_UNCLASSIFIED | e7qo6V2 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
EA [auth T] | PF10075 | e7qo6T1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10075 | ECOD (1.6) |
EA [auth T] | PF10075 | e7qo6T2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF10075 | ECOD (1.6) |
FA [auth X] | PF04683 | e7qo6X1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PF04683 | ECOD (1.6) |
B [auth b] | PF00227,PF10584 | e7qo6b1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
P [auth B] | PF00227,PF10584 | e7qo6B1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
HA [auth Z] | PF17781 | e7qo6Z1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: 26S proteasome subunit Rpn2 N-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 N-terminal domain | F: PF17781 | ECOD (1.6) |
HA [auth Z] | PF01851,PF18051 | e7qo6Z2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: PF01851,PF18051 | ECOD (1.6) |
IA [auth N] | PF18004 | e7qo6N1 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: PF18004 | ECOD (1.6) |
IA [auth N] | PF21505 | e7qo6N2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: 26S proteasome subunit Rpn2 N-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 N-terminal domain | F: PF21505 | ECOD (1.6) |
IA [auth N] | PF01851 | e7qo6N3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: PF01851 | ECOD (1.6) |
JA [auth S] | PF01399 | e7qo6S2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
JA [auth S] | F_UNCLASSIFIED | e7qo6S1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
JA [auth S] | PF08375 | e7qo6S3 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN3 C-terminal helix | F: PF08375 | ECOD (1.6) |
KA [auth P] | PF01399 | e7qo6P3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
KA [auth P] | PF22241 | e7qo6P2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF22241 | ECOD (1.6) |
KA [auth P] | PF18098 | e7qo6P1 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN5 C-terminal helix | F: PF18098 | ECOD (1.6) |
LA [auth Q] | PF01399 | e7qo6Q3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
LA [auth Q] | PF18055 | e7qo6Q1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF18055 | ECOD (1.6) |
LA [auth Q] | PF18503 | e7qo6Q2 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology) | T: 26S proteasome regulatory subunit RPN6 C-termial helix | F: PF18503 | ECOD (1.6) |
MA [auth R] | PF01399 | e7qo6R3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
MA [auth R] | PF10602 | e7qo6R1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF10602 | ECOD (1.6) |
MA [auth R] | PF21154 | e7qo6R2 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN7 C-terminal helix | F: PF21154 | ECOD (1.6) |
NA [auth U] | PF01398 | e7qo6U2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
NA [auth U] | PF13012 | e7qo6U1 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: PF13012 | ECOD (1.6) |
OA [auth O] | PF01399 | e7qo6O1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
OA [auth O] | PF22037 | e7qo6O2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF22037 | ECOD (1.6) |
OA [auth O] | PF18261 | e7qo6O3 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN9 C-terminal helix | F: PF18261 | ECOD (1.6) |
QA [auth I] | PF16450 | e7qo6I3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF16450 | ECOD (1.6) |
QA [auth I] | PF17862 | e7qo6I2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
QA [auth I] | PF00004 | e7qo6I1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C [auth c] | PF00227,PF10584 | e7qo6c1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
Q [auth C] | PF00227,PF10584 | e7qo6C1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
RA [auth K] | PF16450 | e7qo6K1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF16450 | ECOD (1.6) |
RA [auth K] | F_UNCLASSIFIED | e7qo6K2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
RA [auth K] | PF00004 | e7qo6K3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
SA [auth L] | PF16450 | e7qo6L1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF16450 | ECOD (1.6) |
SA [auth L] | PF17862 | e7qo6L2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
SA [auth L] | PF00004 | e7qo6L3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
VA [auth 8] | PF00443 | e7qo681 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00443 | ECOD (1.6) |
WA [auth 9] | PF00240 | e7qo691 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth d] | PF00227,PF10584 | e7qo6d1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
R [auth D] | PF00227,PF10584 | e7qo6D1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
E [auth e] | PF00227,PF10584 | e7qo6e1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
S [auth E] | PF00227,PF10584 | e7qo6E1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
F [auth f] | PF00227,PF10584 | e7qo6f1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
T [auth F] | PF00227,PF10584 | e7qo6F1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
G [auth g] | PF00227,PF10584 | e7qo6g1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
U [auth G] | PF00227,PF10584 | e7qo6G1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF10584 | ECOD (1.6) |
H [auth h] | PF00227 | e7qo6h1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
V [auth 1] | PF00227 | e7qo611 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227 | ECOD (1.6) |
I [auth i] | PF00227,PF12465 | e7qo6i1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF12465 | ECOD (1.6) |
W [auth 2] | PF00227,PF12465 | e7qo621 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Proteasome subunits | F: PF00227,PF12465 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth a], O [auth A] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
A [auth a], O [auth A] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
J [auth j], X [auth 3] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
K [auth k], Y [auth 4] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
L [auth l], Z [auth 5] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
AA [auth 6], M [auth m] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
BA [auth 7], N [auth n] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
CA [auth W] | PF13519 | von Willebrand factor type A domain (VWA_2) | von Willebrand factor type A domain | - | Domain |
DA [auth V] | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | - | Family |
EA [auth T] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
FA [auth X] | PF04683 | Proteasome complex subunit Rpn13, Pru domain (Rpn13_ADRM1_Pru) | Proteasome complex subunit Rpn13, Pru domain | This family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of ... | Domain |
GA [auth Y] | PF05160 | DSS1/SEM1 family (DSS1_SEM1) | DSS1/SEM1 family | - | Family |
B [auth b], P [auth B] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
B [auth b], P [auth B] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
HA [auth Z] | PF17781 | RPN1 N-terminal domain (RPN1_RPN2_N) | RPN1 N-terminal domain | This domain is found at the N-terminus of the 26S proteasome regulatory subunits RPN1 (also known as 26S proteasome non-ATPase regulatory subunit 2 (PMSD2)[1]. The domain is formed by an array of alpha helices [2]. | Domain |
HA [auth Z] | PF01851 | Proteasome/cyclosome repeat (PC_rep) | Proteasome/cyclosome repeat | - | Repeat |
HA [auth Z] | PF18051 | 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal (RPN1_C) | 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal | This is the C-terminal domain found in RPN1 proteins (26S proteasome non-ATPase regulatory subunit 2). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit ... | Domain |
IA [auth N] | PF13646 | HEAT repeats (HEAT_2) | HEAT repeats | - | Repeat |
IA [auth N] | PF18004 | 26S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C) | 26S proteasome regulatory subunit RPN2 C-terminal domain | This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ... | Domain |
IA [auth N] | PF21505 | 26S proteasome subunit RPN2, N-terminal domain (RPN2_N) | 26S proteasome subunit RPN2, N-terminal domain | This entry represents the N-terminal helical domain of 26S proteasome regulatory subunit RPN2 and 26S proteasome non-ATPase regulatory subunit 1 (PSMD1). It adopts a rod-like structure [1-5]. | Domain |
IA [auth N] | PF01851 | Proteasome/cyclosome repeat (PC_rep) | Proteasome/cyclosome repeat | - | Repeat |
JA [auth S] | PF08375 | Proteasome regulatory subunit C-terminal (Rpn3_C) | Proteasome regulatory subunit C-terminal | - | Family |
JA [auth S] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
KA [auth P] | PF18098 | 26S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C) | 26S proteasome regulatory subunit RPN5 C-terminal domain | This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ... | Domain |
KA [auth P] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
LA [auth Q] | PF18055 | 26S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N) | 26S proteasome regulatory subunit RPN6 N-terminal domain | - | Repeat |
LA [auth Q] | PF18503 | 26S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix) | 26S proteasome subunit RPN6 C-terminal helix domain | This is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. | Domain |
LA [auth Q] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
MA [auth R] | PF21154 | 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C) | 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix | RPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. | Domain |
MA [auth R] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
MA [auth R] | PF10602 | 26S proteasome subunit RPN7 (RPN7) | 26S proteasome subunit RPN7 | - | Repeat |
NA [auth U] | PF13012 | Maintenance of mitochondrial structure and function (MitMem_reg) | Maintenance of mitochondrial structure and function | - | Family |
NA [auth U] | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB) | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | - | Family |
OA [auth O] | PF18261 | Rpn9 C-terminal helix (Rpn9_C) | Rpn9 C-terminal helix | - | Family |
OA [auth O] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
PA [auth H] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
PA [auth H] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
QA [auth I] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
QA [auth I] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
QA [auth I] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
C [auth c], Q [auth C] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
C [auth c], Q [auth C] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
RA [auth K] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
RA [auth K] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
SA [auth L] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
SA [auth L] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
SA [auth L] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
TA [auth M] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
TA [auth M] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
TA [auth M] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
UA [auth J] | PF16450 | Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C) | Proteasomal ATPase OB C-terminal domain | This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] | Domain |
UA [auth J] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
UA [auth J] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
VA [auth 8] | PF00443 | Ubiquitin carboxyl-terminal hydrolase (UCH) | Ubiquitin carboxyl-terminal hydrolase | - | Family |
WA [auth 9] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
D [auth d], R [auth D] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
D [auth d], R [auth D] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
E [auth e], S [auth E] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
E [auth e], S [auth E] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
F [auth f], T [auth F] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
F [auth f], T [auth F] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
G [auth g], U [auth G] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
G [auth g], U [auth G] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
H [auth h], V [auth 1] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
I [auth i], W [auth 2] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
I [auth i], W [auth 2] | PF12465 | Proteasome beta subunits C terminal (Pr_beta_C) | Proteasome beta subunits C terminal | - | Family |