7QIJ | pdb_00007qij

Complex of the Yersinia enterocolitica Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth MC]	VEGFR-1-like_Ig-like	e7qijMC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
Z [auth RC]	VEGFR-1-like_Ig-like	e7qijRC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
XA [auth DC]	VEGFR-1-like_Ig-like	e7qijDC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
X [auth KC]	VEGFR-1-like_Ig-like	e7qijKC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
VA [auth BC]	VEGFR-1-like_Ig-like	e7qijBC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
V [auth JC]	VEGFR-1-like_Ig-like	e7qijJC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
TA [auth AC]	VEGFR-1-like_Ig-like	e7qijAC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
T [auth CC]	VEGFR-1-like_Ig-like	e7qijCC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
RA [auth IC]	VEGFR-1-like_Ig-like	e7qijIC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
PA [auth HC]	VEGFR-1-like_Ig-like	e7qijHC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
NA [auth FC]	VEGFR-1-like_Ig-like	e7qijFC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
LA [auth EC]	VEGFR-1-like_Ig-like	e7qijEC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
JA [auth PC]	VEGFR-1-like_Ig-like	e7qijPC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
HA [auth OC]	VEGFR-1-like_Ig-like	e7qijOC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
FA [auth NC]	VEGFR-1-like_Ig-like	e7qijNC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
DA [auth LC]	VEGFR-1-like_Ig-like	e7qijLC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
BB [auth QC]	VEGFR-1-like_Ig-like	e7qijQC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
BA [auth GC]	VEGFR-1-like_Ig-like	e7qijGC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
R [auth RA]	VEGFR-1-like_Ig-like	e7qijRA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
Q [auth QA]	VEGFR-1-like_Ig-like	e7qijQA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
P [auth PA]	VEGFR-1-like_Ig-like	e7qijPA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
O [auth OA]	VEGFR-1-like_Ig-like	e7qijOA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
N [auth NA]	VEGFR-1-like_Ig-like	e7qijNA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
M [auth MA]	VEGFR-1-like_Ig-like	e7qijMA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
L [auth LA]	VEGFR-1-like_Ig-like	e7qijLA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
K [auth KA]	VEGFR-1-like_Ig-like	e7qijKA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
J [auth JA]	VEGFR-1-like_Ig-like	e7qijJA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
I [auth IA]	VEGFR-1-like_Ig-like	e7qijIA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
H [auth HA]	VEGFR-1-like_Ig-like	e7qijHA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
G [auth GA]	VEGFR-1-like_Ig-like	e7qijGA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
F [auth FA]	VEGFR-1-like_Ig-like	e7qijFA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
E [auth EA]	VEGFR-1-like_Ig-like	e7qijEA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
D [auth DA]	VEGFR-1-like_Ig-like	e7qijDA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
C [auth CA]	VEGFR-1-like_Ig-like	e7qijCA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
B [auth BA]	VEGFR-1-like_Ig-like	e7qijBA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)
A [auth AA]	VEGFR-1-like_Ig-like	e7qijAA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: VEGFR-1-like_Ig-like	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	Chaperone protein YscY	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], IA [auth PB], KA [auth EB], MA [auth FB], OA [auth HB], QA [auth IB], S [auth CB], SA [auth AB], U [auth JB], UA [auth BB], W [auth KB], WA [auth DB], Y [auth RB], YA [auth MB]	Yop proteins translocation protein X	-	-	cellular anatomical structure extracellular region
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	Low calcium response locus protein D	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	IPR016684	Type III secretion system chaperone, YscY	Family
BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], BA [auth GC], BB [auth QC], DA [auth LC], FA [auth NC], HA [auth OC], JA [auth PC], LA [auth EC], NA [auth FC], PA [auth HC], RA [auth IC], T [auth CC], TA [auth AC], V [auth JC], VA [auth BC], X [auth KC], XA [auth DC], Z [auth RC], ZA [auth MC]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], AA [auth GB], AB [auth QB], CA [auth LB], EA [auth NB], GA [auth OB], IA [auth PB], KA [auth EB], MA [auth FB], OA [auth HB], QA [auth IB], S [auth CB], SA [auth AB], U [auth JB], UA [auth BB], W [auth KB], WA [auth DB], Y [auth RB], YA [auth MB]	IPR012672	Type III secretion apparatus assembly protein SctX	Family
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042194	FHIPEP, domain 1	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042196	FHIPEP, domain 4	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR001712	Type III secretion system FHIPEP	Family
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR042193	FHIPEP, domain 3	Homologous Superfamily
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR025505	FHIPEP conserved site	Conserved Site
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	IPR006302	Type III secretion protein HrcV	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA] A [auth AA], B [auth BA], C [auth CA], D [auth DA], E [auth EA], F [auth FA], G [auth GA], H [auth HA], I [auth IA], J [auth JA], K [auth KA], L [auth LA], M [auth MA], N [auth NA], O [auth OA], P [auth PA], Q [auth QA], R [auth RA]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.