7Q57 | pdb_00007q57

Single Particle Cryo-EM structure of photosynthetic A10B10 glyceraldehyde-3-phospahte dehydrogenase from Spinacia oleracea.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth R]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
B [auth P]SCOP2B SuperfamilyGAPDH-like 8056136 3000043 SCOP2B (2022-06-29)
A [auth O]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)
C [auth Q]SCOP2B SuperfamilyGAPDH-like 8068923 3000043 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth R]Gp_dh_Ce7q57R1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
D [auth R]Gp_dh_Ne7q57R2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
F [auth B]Gp_dh_Ce7q57B2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
F [auth B]Gp_dh_Ne7q57B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
H [auth D]Gp_dh_Ce7q57D1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
H [auth D]Gp_dh_Ne7q57D2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
J [auth H]Gp_dh_Ce7q57H1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
J [auth H]Gp_dh_Ne7q57H2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
L [auth F]Gp_dh_Ce7q57F1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
L [auth F]Gp_dh_Ne7q57F2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
N [auth J]Gp_dh_Ce7q57J2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
N [auth J]Gp_dh_Ne7q57J1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
P [auth L]Gp_dh_Ce7q57L2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
P [auth L]Gp_dh_Ne7q57L1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
TGp_dh_Ce7q57T2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
TGp_dh_Ne7q57T1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
R [auth N]Gp_dh_Ce7q57N2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
R [auth N]Gp_dh_Ne7q57N1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
B [auth P]Gp_dh_Ce7q57P2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
B [auth P]Gp_dh_Ne7q57P1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
A [auth O]Gp_dh_Ce7q57O1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
A [auth O]Gp_dh_Ne7q57O2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
E [auth A]Gp_dh_Ce7q57A1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
E [auth A]Gp_dh_Ne7q57A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
G [auth C]Gp_dh_Ce7q57C2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
G [auth C]Gp_dh_Ne7q57C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
K [auth E]Gp_dh_Ce7q57E2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
K [auth E]Gp_dh_Ne7q57E1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
M [auth I]Gp_dh_Ce7q57I2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
M [auth I]Gp_dh_Ne7q57I1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
Q [auth M]Gp_dh_Ce7q57M1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
Q [auth M]Gp_dh_Ne7q57M2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
SGp_dh_Ce7q57S2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
SGp_dh_Ne7q57S1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
O [auth K]Gp_dh_Ce7q57K1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
O [auth K]Gp_dh_Ne7q57K2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
I [auth G]Gp_dh_Ce7q57G1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
I [auth G]Gp_dh_Ne7q57G2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)
C [auth Q]Gp_dh_Ce7q57Q2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: Gp_dh_CECOD (1.6)
C [auth Q]Gp_dh_Ne7q57Q1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: Gp_dh_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Domain
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainDomain
IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active siteActive Site
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase familyFamily
IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domainDomain
IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type IFamily
IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainDomain
IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active siteActive Site
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase familyFamily
IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domainDomain
IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type IFamily