7PWO
Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth T1] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8107538 | 3000034 | SCOP2B (2022-06-29) |
K [auth a1] | SCOP2 Family | Ribosomal protein S26e | 8107193 | 4006236 | SCOP2 (2022-06-29) |
K [auth a1] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107194 | 3000068 | SCOP2 (2022-06-29) |
L [auth V1] | SCOP2 Family | Ribosomal protein S21e | 8107163 | 4006215 | SCOP2 (2022-06-29) |
L [auth V1] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107164 | 3000068 | SCOP2 (2022-06-29) |
S [auth c1] | SCOP2 Family | Cold shock DNA-binding domain-like | 8107165 | 4001909 | SCOP2 (2022-06-29) |
S [auth c1] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8107166 | 3000135 | SCOP2 (2022-06-29) |
T [auth O1] | SCOP2 Family | Ribosomal protein L18p and S11 | 8107239 | 4000555 | SCOP2 (2022-06-29) |
T [auth O1] | SCOP2 Superfamily | Translational machinery components | 8107240 | 3000571 | SCOP2 (2022-06-29) |
U [auth W1] | SCOP2 Family | Ribosomal protein S8 | 8107237 | 4002027 | SCOP2 (2022-06-29) |
U [auth W1] | SCOP2 Superfamily | Ribosomal protein S8 | 8107238 | 3000709 | SCOP2 (2022-06-29) |
X [auth U1] | SCOP2 Family | Ribosomal protein S10 | 8107167 | 4001240 | SCOP2 (2022-06-29) |
X [auth U1] | SCOP2 Superfamily | Ribosomal protein S10 | 8107168 | 3001336 | SCOP2 (2022-06-29) |
CA [auth B2] | SCOP2B Superfamily | Translational proteins | 8107196 | 3000811 | SCOP2B (2022-06-29) |
EA [auth D2] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8107235 | 4006591 | SCOP2 (2022-06-29) |
EA [auth D2] | SCOP2 Superfamily | Translational machinery components | 8107236 | 3000571 | SCOP2 (2022-06-29) |
IA [auth I2] | SCOP2 Family | Ribosomal protein L10e | 8107185 | 4001135 | SCOP2 (2022-06-29) |
IA [auth I2] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8107186 | 3000884 | SCOP2 (2022-06-29) |
JA [auth J2] | SCOP2 Family | Ribosomal protein L5 | 8107181 | 4001498 | SCOP2 (2022-06-29) |
JA [auth J2] | SCOP2 Superfamily | RL5-like | 8107182 | 3001709 | SCOP2 (2022-06-29) |
MA [auth N2] | SCOP2 Family | L15e | 8107173 | 4000945 | SCOP2 (2022-06-29) |
MA [auth N2] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8107174 | 3000210 | SCOP2 (2022-06-29) |
OA [auth P2] | SCOP2B Superfamily | Ribosomal protein L22 | 8107176 | 3001078 | SCOP2B (2022-06-29) |
QA [auth R2] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8107179 | 4001138 | SCOP2 (2022-06-29) |
QA [auth R2] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8107180 | 3000890 | SCOP2 (2022-06-29) |
UA [auth V2] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8107198 | 3000433 | SCOP2B (2022-06-29) |
YA [auth a2] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8107205 | 4003555 | SCOP2 (2022-06-29) |
YA [auth a2] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8107206 | 3001045 | SCOP2 (2022-06-29) |
AB [auth c2] | SCOP2B Superfamily | L30e-like | 8107172 | 3001739 | SCOP2B (2022-06-29) |
CB [auth e2] | SCOP2 Family | Ribosomal protein L32e | 8107187 | 4003517 | SCOP2 (2022-06-29) |
CB [auth e2] | SCOP2 Superfamily | Ribosomal protein L32e | 8107188 | 3000982 | SCOP2 (2022-06-29) |
EB [auth g2] | SCOP2 Family | Ribosomal protein L34e-like | 8107189 | 4006193 | SCOP2 (2022-06-29) |
EB [auth g2] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8107190 | 3002203 | SCOP2 (2022-06-29) |
F [auth S1] | SCOP2 Family | Ribosomal protein S13 | 8107203 | 4000260 | SCOP2 (2022-06-29) |
F [auth S1] | SCOP2 Superfamily | S13-like H2TH domain | 8107204 | 3000053 | SCOP2 (2022-06-29) |
JB [auth l2] | SCOP2B Superfamily | Ribosomal protein L39e | 8107108 | 3001756 | SCOP2B (2022-06-29) |
KB [auth m2] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8107202 | 3001320 | SCOP2B (2022-06-29) |
MB [auth p2] | SCOP2 Family | Ribosomal protein L37ae | 8107191 | 4003704 | SCOP2 (2022-06-29) |
MB [auth p2] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8107192 | 3001320 | SCOP2 (2022-06-29) |
G [auth Q1] | SCOP2 Family | Translational machinery components | 8107183 | 4000951 | SCOP2 (2022-06-29) |
G [auth Q1] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8107184 | 3000100 | SCOP2 (2022-06-29) |
RB [auth F1] | SCOP2 Family | Ribosomal protein S7 | 8107207 | 4001112 | SCOP2 (2022-06-29) |
RB [auth F1] | SCOP2 Superfamily | Ribosomal protein S7 | 8107208 | 3000799 | SCOP2 (2022-06-29) |
SB [auth Y1] | SCOP2 Family | Ribosomal protein S24e | 8107169 | 4003636 | SCOP2 (2022-06-29) |
SB [auth Y1] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8107170 | 3000210 | SCOP2 (2022-06-29) |
VB [auth A1] | SCOP2 Family | Ribosomal protein S2-like | 8107177 | 4003744 | SCOP2 (2022-06-29) |
VB [auth A1] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8107178 | 3001397 | SCOP2 (2022-06-29) |
I [auth B1] | SCOP2 Family | Ribosomal S3Ae | 8107199 | 4006095 | SCOP2 (2022-06-29) |
I [auth B1] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8107200 | 3002166 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth T1] | PF01090 | e7pwoT11 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
J [auth b1] | PF01667 | e7pwob11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
K [auth a1] | PF01283 | e7pwoa11 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
L [auth V1] | PF01249 | e7pwoV11 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
M [auth R1] | PF00833 | e7pwoR11 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
N [auth K1] | PF03501 | e7pwoK11 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
O [auth I1] | PF01201 | e7pwoI11 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
P [auth e1] | PF04758 | e7pwoe11 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
Q [auth H1] | PF01251 | e7pwoH12 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: PF01251 | ECOD (1.6) |
R [auth n1] | PF05162 | e7pwon11 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
S [auth c1] | PF01200 | e7pwoc11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
B [auth N1] | PF08069 | e7pwoN11 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
B [auth N1] | PF00312 | e7pwoN12 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
T [auth O1] | PF00411 | e7pwoO11 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
U [auth W1] | PF00410 | e7pwoW11 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
U [auth W1] | PF00410 | e7pwoW12 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
V [auth E1] | PF00900 | e7pwoE12 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
V [auth E1] | PF00467,PF16121 | e7pwoE13 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF16121 | ECOD (1.6) |
V [auth E1] | PF08071 | e7pwoE11 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF08071 | ECOD (1.6) |
W [auth L1] | PF00366,PF16205 | e7pwoL11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
X [auth U1] | PF00338 | e7pwoU11 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
BA [auth A2] | PF00181 | e7pwoA21 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
BA [auth A2] | PF03947 | e7pwoA22 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
CA [auth B2] | PF00297 | e7pwoB21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
C [auth J1] | PF00163,PF01479 | e7pwoJ11 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
EA [auth D2] | PF14204,PF17144 | e7pwoD21 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
FA [auth F2] | PF00327 | e7pwoF21 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
GA [auth G2] | PF01248 | e7pwoG21 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
HA [auth H2] | PF00347 | e7pwoH21 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
IA [auth I2] | PF00252 | e7pwoI21 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
JA [auth J2] | PF00281,PF00673 | e7pwoJ21 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
KA [auth L2] | PF01294 | e7pwoL21 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
LA [auth M2] | PF01929 | e7pwoM21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01929 | ECOD (1.6) |
MA [auth N2] | PF00827 | e7pwoN21 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
D [auth D1] | PF00189 | e7pwoD12 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
D [auth D1] | F_UNCLASSIFIED | e7pwoD11 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
NA [auth O2] | PF00572 | e7pwoO21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
OA [auth P2] | PF00237 | e7pwoP21 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
PA [auth Q2] | PF17135 | e7pwoQ21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
QA [auth R2] | PF01280 | e7pwoR21 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
QA [auth R2] | PF01280 | e7pwoR22 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
RA [auth S2] | F_UNCLASSIFIED | e7pwoS22 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
RA [auth S2] | PF01775 | e7pwoS21 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
SA [auth T2] | PF01157 | e7pwoT21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
TA [auth U2] | PF01776 | e7pwoU21 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
UA [auth V2] | PF00238 | e7pwoV21 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
VA [auth X2] | PF00276,PF03939 | e7pwoX21 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
WA [auth Y2] | PF16906 | e7pwoY21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
E [auth X1] | PF00164 | e7pwoX11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
XA [auth Z2] | PF00467,PF01777 | e7pwoZ21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
YA [auth a2] | PF00828 | e7pwoa21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
ZA [auth b2] | PF01779 | e7pwob21 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
AB [auth c2] | PF01248 | e7pwoc21 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
BB [auth d2] | PF01198 | e7pwod21 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
CB [auth e2] | PF01655 | e7pwoe21 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
DB [auth f2] | PF01247 | e7pwof21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
EB [auth g2] | PF01199 | e7pwog21 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
FB [auth h2] | PF00831 | e7pwoh21 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
F [auth S1] | PF00416 | e7pwoS11 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
HB [auth j2] | PF01907 | e7pwoj21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
IB [auth k2] | PF01781 | e7pwok21 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
JB [auth l2] | PF00832 | e7pwol21 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
KB [auth m2] | PF01020 | e7pwom21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01020 | ECOD (1.6) |
LB [auth o2] | PF00935 | e7pwoo21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
MB [auth p2] | PF01780 | e7pwop21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
OB [auth W2] | PF01246 | e7pwoW21 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
QB [auth d1] | PF00253 | e7pwod11 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
G [auth Q1] | PF00380 | e7pwoQ11 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
RB [auth F1] | PF00177 | e7pwoF11 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
SB [auth Y1] | PF01282 | e7pwoY11 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
TB [auth G1] | PF01092 | e7pwoG11 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
VB [auth A1] | PF00318 | e7pwoA11 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
H [auth C1] | PF03719 | e7pwoC12 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
H [auth C1] | PF00333 | e7pwoC13 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
H [auth C1] | PF00333 | e7pwoC11 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
I [auth B1] | PF01015 | e7pwoB11 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
I [auth B1] | PF01015 | e7pwoB12 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth T1] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
L [auth V1] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
N [auth K1] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
O [auth I1] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
Q [auth H1] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
B [auth N1] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
B [auth N1] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
B [auth N1] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
T [auth O1] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
U [auth W1] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
V [auth E1] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
V [auth E1] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
V [auth E1] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
W [auth L1] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
W [auth L1] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
X [auth U1] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
BA [auth A2] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
BA [auth A2] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
BA [auth A2] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
CA [auth B2] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
C [auth J1] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
C [auth J1] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
DA [auth C2] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
DA [auth C2] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
DA [auth C2] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
EA [auth D2] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
EA [auth D2] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
EA [auth D2] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
FA [auth F2] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
FA [auth F2] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
HA [auth H2] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
HA [auth H2] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
IA [auth I2] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
IA [auth I2] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
JA [auth J2] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
JA [auth J2] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
JA [auth J2] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
KA [auth L2] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
KA [auth L2] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
LA [auth M2] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | - | Family |
LA [auth M2] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
MA [auth N2] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
D [auth D1] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
D [auth D1] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
NA [auth O2] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
NA [auth O2] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
OA [auth P2] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
OA [auth P2] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
PA [auth Q2] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
QA [auth R2] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
RA [auth S2] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
TA [auth U2] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
UA [auth V2] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
VA [auth X2] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
WA [auth Y2] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
E [auth X1] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
XA [auth Z2] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
XA [auth Z2] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
F [auth S1] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
OB [auth W2] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
G [auth Q1] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
RB [auth F1] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
SB [auth Y1] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
TB [auth G1] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
VB [auth A1] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
VB [auth A1] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
H [auth C1] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
H [auth C1] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
H [auth C1] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
I [auth B1] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |