Annotations: 7PDY

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	AAA_lid_RFC1	e7pdyF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
D	zf-NPL4	e7pdyD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: zf-NPL4	ECOD (v295.2)
B	zf-NPL4	e7pdyB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: zf-NPL4	ECOD (v295.2)
E	PAE	e7pdyE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PAE	ECOD (v295.2)
C	PAE	e7pdyC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PAE	ECOD (v295.2)
A	PAE	e7pdyA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PAE	ECOD (v295.2)

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F	38 kDa phosphoprotein,MHC class II beta chain	-	antigen processing and presentation antigen processing and presentation of peptide or polysaccharide antigen via MHC class II immune system process response to stimulus immune response adaptive immune response	cellular anatomical structure membrane MHC protein complex cell periphery MHC class II protein complex protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex
A, C, E	MHC class II alpha chain	cation binding ion binding binding metal ion binding small molecule binding	antigen processing and presentation immune system process response to stimulus immune response	MHC protein complex cell periphery MHC class II protein complex protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex

Chains	Accession	Name	Type
B, D, F	IPR006930	Herpesvirus pp38 phosphoprotein	Family
B, D, F	IPR003597	Immunoglobulin C1-set	Domain
B, D, F	IPR000353	MHC class II, beta chain, N-terminal	Domain
B, D, F	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D, F	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B, D, F	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
B, D, F	IPR007110	Immunoglobulin-like domain	Domain
B, D, F	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
B, D, F	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
B, D, F	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily
A, C, E	IPR003597	Immunoglobulin C1-set	Domain
A, C, E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C, E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C, E	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
A, C, E	IPR007110	Immunoglobulin-like domain	Domain
A, C, E	IPR001003	MHC class II, alpha chain, N-terminal	Domain
A, C, E	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
A, C, E	IPR014745	MHC class II, alpha/beta chain, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7PDY | pdb_00007pdy