7OZT | pdb_00007ozt

Nanobodies restore stability to cancer-associated mutants of tumor suppressor protein p16INK4a

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth BBB]	SCOP2B Superfamily	Ankyrin repeat	8044602	3000154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth BBB]	Ank_2	e7oztBBB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ankyrin repeat (From Topology)	T: Ankyrin repeat	F: Ank_2	ECOD (1.6)
A [auth AAA]	V-set_8	e7oztAAA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth BBB]	Cyclin-dependent kinase inhibitor 2A	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding enzyme regulator activity cyclin-dependent protein kinase regulator activity enzyme inhibitor activity protein kinase regulator activity protein kinase inhibitor activity molecular function inhibitor activity cyclin-dependent protein serine/threonine kinase inhibitor activity molecular function regulator activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding enzyme regulator activity cyclin-dependent protein kinase regulator activity enzyme inhibitor activity protein kinase regulator activity protein kinase inhibitor activity molecular function inhibitor activity cyclin-dependent protein serine/threonine kinase inhibitor activity molecular function regulator activity cyclin-dependent protein serine/threonine kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity RNA binding nucleic acid binding kinase binding enzyme binding protein kinase binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development catabolic process negative regulation of proteolysis negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of proteolysis involved in protein catabolic process regulation of proteolysis modification-dependent macromolecule catabolic process proteolysis protein metabolic process negative regulation of protein metabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of catabolic process regulation of protein metabolic process regulation of catabolic process protein catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process replicative senescence cell cycle cell cycle process cell population proliferation epithelial cell proliferation keratinocyte proliferation regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth cellular component organization or biogenesis regulation of localization cellular localization nucleocytoplasmic transport transport regulation of transport nuclear transport regulation of nucleocytoplasmic transport intracellular transport establishment of localization localization regulation of cellular localization establishment of localization in cell regulation of intracellular transport leukocyte apoptotic process positive regulation of biological process regulation of programmed cell death macrophage apoptotic process positive regulation of myeloid cell apoptotic process positive regulation of macrophage apoptotic process positive regulation of leukocyte apoptotic process positive regulation of cellular process myeloid cell apoptotic process regulation of leukocyte apoptotic process positive regulation of programmed cell death regulation of apoptotic process cell death positive regulation of apoptotic process regulation of macrophage apoptotic process inflammatory cell apoptotic process apoptotic process regulation of myeloid cell apoptotic process programmed cell death multicellular organismal process mammary gland development gland development negative regulation of mammary gland epithelial cell proliferation regulation of multicellular organismal process negative regulation of cell population proliferation regulation of mammary gland epithelial cell proliferation mammary gland epithelium development regulation of cell population proliferation regulation of epithelial cell proliferation negative regulation of multicellular organismal process negative regulation of epithelial cell proliferation mammary gland epithelial cell proliferation regulation of catalytic activity negative regulation of cell cycle negative regulation of catalytic activity regulation of transferase activity negative regulation of kinase activity regulation of cyclin-dependent protein serine/threonine kinase activity phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process protein phosphorylation phosphorylation regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of protein serine/threonine kinase activity regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of cyclin-dependent protein serine/threonine kinase activity negative regulation of protein serine/threonine kinase activity regulation of cell cycle negative regulation of cyclin-dependent protein kinase activity negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation cellular response to stimulus cellular response to stress response to stimulus response to stress cellular senescence small GTPase-mediated signal transduction signaling Ras protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to chemical stimulus response to chemical positive regulation of smooth muscle cell apoptotic process muscle cell apoptotic process smooth muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of smooth muscle cell apoptotic process positive regulation of muscle cell apoptotic process oncogene-induced cell senescence rRNA transcription rRNA metabolic process regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion negative regulation of cell-matrix adhesion negative regulation of cell adhesion cell adhesion cell-matrix adhesion regulation of cell-matrix adhesion negative regulation of cell-substrate adhesion somatic stem cell population maintenance maintenance of cell number stem cell population maintenance transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle mitotic cell cycle process G1/S transition of mitotic cell cycle mitotic cell cycle phase transition apoptotic process involved in morphogenesis mammary gland morphogenesis apoptotic process involved in mammary gland involution apoptotic process involved in development anatomical structure morphogenesis gland morphogenesis tissue remodeling mammary gland involution animal organ morphogenesis chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis regulation of developmental process positive regulation of apoptotic process involved in mammary gland involution positive regulation of developmental process positive regulation of apoptotic process involved in morphogenesis positive regulation of apoptotic process involved in development regulation of apoptotic process involved in development regulation of apoptotic process involved in morphogenesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen chromatin chromosome senescence-associated heterochromatin focus heterochromatin cytoplasm cytosol
A [auth AAA]	Camelid nanobody NB09	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth BBB]	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B [auth BBB]	IPR050776	Ankyrin Repeat and Cyclin-Dependent Kinase Inhibitor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth BBB]	Pharos: P42771	melanoma plasma cell myeloma cutaneous melanoma malignant glioma cancer melanoma and neural system tumor syndrome dysplastic nevus syndrome adrenal cortex carcinoma melanoma-pancreatic cancer syndrome diffuse large B-cell lymphoma esophageal adenocarcinoma familial melanoma lymphoma non-small cell lung carcinoma Sezary syndrome melanoma plasma cell myeloma cutaneous melanoma malignant glioma cancer melanoma and neural system tumor syndrome dysplastic nevus syndrome adrenal cortex carcinoma melanoma-pancreatic cancer syndrome diffuse large B-cell lymphoma esophageal adenocarcinoma familial melanoma lymphoma non-small cell lung carcinoma Sezary syndrome Li-Fraumeni syndrome breast carcinoma malignant mesothelioma head and neck squamous cell carcinoma pancreatic ductal adenocarcinoma thymoma urinary bladder cancer esophageal squamous cell carcinoma nasopharyngeal carcinoma neuroblastoma glaucoma exocrine pancreatic carcinoma lung adenocarcinoma vulvar lichen sclerosus poisoning breast cancer gastric cancer glioblastoma adenocarcinoma primary cutaneous T-cell non-Hodgkin lymphoma squamous cell carcinoma thymic carcinoma trisomy mixed glioma esophageal cancer peripheral neuropathy Neoplasm Invasiveness acute lymphoblastic leukemia perineurioma tubular adenocarcinoma peripheral nervous system disease liver cancer bone disease lung cancer granular cell carcinoma ulcerative colitis peripheral nervous system neoplasm brain aneurysm urinary bladder neoplasm myeloid neoplasm pituitary cancer brain glioma nasopharyngeal disease lung disease neoplasm of neck Burkitt lymphoma nerve sheath neoplasm abdominal aortic aneurysm carotid artery disease oral cavity neoplasm granulomatous slack skin disease prostate carcinoma ovarian carcinoma hematologic disease adrenal gland cancer cribriform carcinoma of breast pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atypical teratoid rhabdoid tumor melanoma, cutaneous malignant, susceptibility to, 1 large cell medulloblastoma benign neoplasm digestive system disease biliary tract neoplasm liver neoplasm brain cancer urogenital neoplasm myocardial infarction eye disease lung benign neoplasm familial pancreatic carcinoma gastric neoplasm cataract open-angle glaucoma glioma osteosarcoma adrenal carcinoma psoriasis congenital anemia hepatocellular carcinoma skin basal cell carcinoma cutaneous lupus erythematosus pancreatic neoplasm B-cell acute lymphoblastic leukemia depressive disorder leukemia mesothelioma pilocytic astrocytoma low tension glaucoma brain disease uterine disease plasma cell neoplasm brainstem cancer neoplasm of esophagus precancerous condition lymphatic system disease breast disease major depressive disorder acute T cell leukemia primary cutaneous T-cell lymphoma childhood acute lymphoblastic leukemia oral cavity cancer primitive neuroectodermal tumor malignant pancreatic neoplasm colorectal cancer ovarian cancer heart disease cribriform carcinoma pancreatic intraductal papillary-mucinous neoplasm hereditary diffuse gastric adenocarcinoma astrocytic tumor skin disease inflammatory bowel disease benign mesothelioma thoracic aortic aneurysm peripheral arterial disease benign neoplasm of pancreas

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.