7OYK | pdb_00007oyk

DNA-binding domain of CggR in complex with the DNA operator

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	Arm, ARM_PUB	e7oykAAA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
B [auth DDD]	Arm, ARM_PUB	e7oykDDD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
C [auth CCC]	Arm, ARM_PUB	e7oykCCC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)
D [auth BBB]	Arm, ARM_PUB	e7oykBBB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	PF21715	CggR N-terminal DNA binding domain (CggR_N)	CggR N-terminal DNA binding domain	The central glycolytic genes repressor (CggR) controls the transcription of the gapA operon encoding five key glycolytic enzymes in Bacillus subtilis. CggR recognizes a unique DNA target sequence comprising two direct repeats and fructose-1,6-bisphos ...	The central glycolytic genes repressor (CggR) controls the transcription of the gapA operon encoding five key glycolytic enzymes in Bacillus subtilis. CggR recognizes a unique DNA target sequence comprising two direct repeats and fructose-1,6-bisphosphate (FBP) is the inducer that negatively controls this interaction. This entry represents the N-terminal DNA-binding domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth FFF], H [auth KKK], I [auth HHH]	DNA operator - strand 2	-	-	-
E [auth EEE], G [auth LLL], J [auth GGG]	DNA operator - strand 1	-	-	-
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	Central glycolytic genes regulator	binding carbohydrate binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of DNA-templated transcription initiation regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of DNA-templated transcription initiation regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR051054	Bacterial SorC Transcriptional Regulators	Family
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR007324	Sugar-binding domain, putative	Domain
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR048715	CggR, N-terminal DNA binding domain	Domain
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.