7OYK

DNA-binding domain of CggR in complex with the DNA operator

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	PF21715	e7oykAAA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF21715	ECOD (1.6)
B [auth DDD]	PF21715	e7oykDDD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF21715	ECOD (1.6)
C [auth CCC]	PF21715	e7oykCCC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF21715	ECOD (1.6)
D [auth BBB]	PF21715	e7oykBBB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF21715	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	PF04198	Putative sugar-binding domain (Sugar-bind)	Putative sugar-binding domain	This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix Pfam:PF00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is ...	This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix Pfam:PF00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	Domain
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	PF21715	CggR N-terminal DNA binding domain (CggR_N)	CggR N-terminal DNA binding domain	The central glycolytic genes repressor (CggR) controls the transcription of the gapA operon encoding five key glycolytic enzymes in Bacillus subtilis. CggR recognizes a unique DNA target sequence comprising two direct repeats and fructose-1,6-bisphos ...	The central glycolytic genes repressor (CggR) controls the transcription of the gapA operon encoding five key glycolytic enzymes in Bacillus subtilis. CggR recognizes a unique DNA target sequence comprising two direct repeats and fructose-1,6-bisphosphate (FBP) is the inducer that negatively controls this interaction. This entry represents the N-terminal DNA-binding domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	Central glycolytic genes regulator	binding carbohydrate binding DNA binding organic cyclic compound binding nucleic acid binding	-	-
E [auth EEE], G [auth LLL], J [auth GGG]	DNA operator - strand 1	-	-	-
F [auth FFF], H [auth KKK], I [auth HHH]	DNA operator - strand 2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR007324	Sugar-binding domain, putative	Domain
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR048715	CggR, N-terminal DNA binding domain	Domain
A [auth AAA], B [auth DDD], C [auth CCC], D [auth BBB]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.