7OUG | pdb_00007oug

STLV-1 intasome:B56 in complex with the strand-transfer inhibitor raltegravir


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth C]SCOP2B SuperfamilyARM repeat-like 8043105 3000116 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyARM repeat-like 8043105 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth B]IN_DBD_Ce7ougB2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
G [auth B]F_UNCLASSIFIEDe7ougB3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
G [auth B]rvee7ougB1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
F [auth A]IN_DBD_Ce7ougA1 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
F [auth A]F_UNCLASSIFIEDe7ougA2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
F [auth A]rvee7ougA3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
B [auth E]IN_DBD_Ce7ougE2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
B [auth E]F_UNCLASSIFIEDe7ougE3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
B [auth E]rvee7ougE1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
A [auth D]IN_DBD_Ce7ougD2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
A [auth D]F_UNCLASSIFIEDe7ougD1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
A [auth D]rvee7ougD3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
H [auth C]B56e7ougC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: B56ECOD (1.6)
C [auth F]B56e7ougF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: B56ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
G [auth B]3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)
F [auth A]3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)
B [auth E]3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)
A [auth D]3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth F],
H [auth C]
PF01603Protein phosphatase 2A regulatory B subunit (B56 family) (B56)Protein phosphatase 2A regulatory B subunit (B56 family)- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
B [auth E],
F [auth A],
G [auth B]
Integrase -
C [auth F],
H [auth C]
Isoform 3 of PC4 and SFRS1-interacting protein,Isoform Gamma-2 of Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform
D [auth I],
I [auth K]
DNA (5'-D(*AP*CP*TP*GP*TP*GP*TP*TP*TP*GP*GP*CP*GP*CP*TP*TP*CP*TP*CP*TP*C)-3')---
E [auth J],
J [auth L]
DNA (5'-D(*GP*AP*GP*AP*GP*AP*AP*GP*CP*GP*CP*CP*AP*AP*AP*CP*AP*CP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage