7OHU | pdb_00007ohu

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
D [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
P [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
W [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
AA [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
R [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
K [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]Ribosomal_L3e7ohuB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
D [auth C]Ribosomal_L4e7ohuC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
D [auth C]Ribos_L4_asso_Ce7ohuC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
FRibosomal_L30_1e7ohuF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
GRibosomal_L7Ae_1e7ohuG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
HRibosomal_L6_2e7ohuH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
HRibosomal_L6e7ohuH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
I [auth L]Ribosomal_L13ee7ohuL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
J [auth M]Ribosomal_L14ee7ohuM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
M [auth P]Ribosomal_L22e7ohuP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
P [auth V]Ribosomal_L14e7ohuV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
Q [auth W]Ribosomal_L10e7ohuW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
Q [auth W]Ribosomal_P0_L10ee7ohuW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
U [auth f]Ribosomal_L35Aee7ohuf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
V [auth h]Ribosomal_L29_2e7ohuh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
W [auth i]Ribosomal_L36ee7ohui1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
X [auth j]Ribosomal_L37ee7ohuj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
AA [auth y]eIF-6e7ohuy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
ERibosomal_L6ee7ohuE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
T [auth e]Ribosomal_L32ee7ohue1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
R [auth Y]Ribosomal_L26e7ohuY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
O [auth S]Ribosomal_L18Ae7ohuS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
N [auth Q]Ribosomal_L18e7ohuQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
L [auth O]Ribosomal_L13e7ohuO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
K [auth N]Ribosomal_L15ee7ohuN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
C [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
D [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
D [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
J [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
J [auth M]PF00467KOW motif (KOW)KOW motif- Family
M [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
P [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
Q [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
Q [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
R [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
R [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
R [auth Y]PF00467KOW motif (KOW)KOW motif- Family
O [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
L [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
K [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S rRNA---
B [auth 2]5.8S rRNA---
C [auth B]60S ribosomal protein L3
D [auth C]60S ribosomal protein L4-A
60S ribosomal protein L7-A
60S ribosomal protein L8-A
60S ribosomal protein L9-A
I [auth L]60S ribosomal protein L13-A
J [auth M]60S ribosomal protein L14-A
M [auth P]60S ribosomal protein L17-A
P [auth V]60S ribosomal protein L23-A
Q [auth W]Ribosome assembly factor MRT4
S [auth b]Nucleolar GTP-binding protein 1
U [auth f]60S ribosomal protein L33-A
V [auth h]60S ribosomal protein L35-A
W [auth i]60S ribosomal protein L36-A
X [auth j]60S ribosomal protein L37-A
Y [auth r]Ribosome biogenesis protein NSA2-
Z [auth u]Ribosome biogenesis protein RLP24
AA [auth y]Eukaryotic translation initiation factor 6
60S ribosomal protein L6-A
T [auth e]60S ribosomal protein L32
R [auth Y]60S ribosomal protein L26-A
O [auth S]60S ribosomal protein L20-A
N [auth Q]60S ribosomal protein L18-A
L [auth O]60S ribosomal protein L16-A
K [auth N]60S ribosomal protein L15-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth B]IPR000597Large ribosomal subunit protein uL3Family
C [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
C [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
D [auth C]IPR002136Large ribosomal subunit protein uL4Family
D [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
D [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
D [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
IPR039699Large ribosomal subunit protein uL30Family
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth L]IPR001380Large ribosomal subunit protein eL13Family
I [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
J [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth M]IPR039660Large ribosomal subunit protein eL14Family
J [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
J [auth M]IPR005824KOWDomain
M [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
M [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
M [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
M [auth P]IPR001063Large ribosomal subunit protein uL22Family
P [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth V]IPR000218Large ribosomal subunit protein uL14Family
P [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Q [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Q [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Q [auth W]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
Q [auth W]IPR051742Ribosomal Assembly Factor uL10Family
Q [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
Q [auth W]IPR033867Ribosome assembly factor Mrt4Family
S [auth b]IPR024926Nucleolar GTP-binding protein 1Family
S [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
S [auth b]IPR012973NOG, C-terminalDomain
S [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
S [auth b]IPR041623NOG1, N-terminal helical domainDomain
S [auth b]IPR006073GTP binding domainDomain
S [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
U [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
U [auth f]IPR001780Large ribosomal subunit protein eL33Family
U [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
V [auth h]IPR001854Large ribosomal subunit protein uL29Family
V [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
W [auth i]IPR000509Large ribosomal subunit protein eL36Family
W [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
X [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
X [auth j]IPR001569Large ribosomal subunit protein eL37Family
X [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
X [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
Y [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
Z [auth u]IPR011017TRASH domainDomain
Z [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
Z [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth u]IPR056366Large ribosomal subunit protein eL24Family
AA [auth y]IPR002769Translation initiation factor IF6Family
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
T [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
T [auth e]IPR001515Large ribosomal subunit protein eL32Family
T [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
R [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
R [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth Y]IPR005824KOWDomain
R [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
O [auth S]IPR028877Large ribosomal subunit protein eL20Family
O [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
O [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
N [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
N [auth Q]IPR000039Large ribosomal subunit protein eL18Family
N [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
L [auth O]IPR005822Large ribosomal subunit protein uL13Family
L [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
K [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
K [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
K [auth N]IPR000439Large ribosomal subunit protein eL15Family