7ODR | pdb_00007odr

State A of the human mitoribosomal large subunit assembly intermediate

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
T [auth F]SCOP2B SuperfamilyRibosomal protein L4 8080706 3001146 SCOP2B (2022-06-29)
X [auth K]SCOP2B SuperfamilyRibosomal protein L13 8100460 3001134 SCOP2B (2022-06-29)
G [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075050 3001320 SCOP2B (2022-06-29)
BA [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8033689 3000995 SCOP2B (2022-06-29)
Y [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8072072 3000433 SCOP2B (2022-06-29)
O [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like 8053893 3002240 SCOP2B (2022-06-29)
J [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8083324 3001346 SCOP2B (2022-06-29)
A [auth u]SCOP2B SuperfamilyNucleotidyltransferase-like 8100396 3000129 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth w]Spuma_A9PTasee7odrw1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
K [auth 5]Spuma_A9PTasee7odr51 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
L [auth 6]Spuma_A9PTasee7odr61 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
T [auth F]Spuma_A9PTasee7odrF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
X [auth K]Spuma_A9PTasee7odrK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
DA [auth Q]Ribosomal_L12_Ne7odrQ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
MA [auth Z]Spuma_A9PTasee7odrZ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
PA [auth c]Spuma_A9PTasee7odrc1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
TA [auth g]Spuma_A9PTasee7odrg1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
XA [auth k]Spuma_A9PTasee7odrk1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
I [auth 3]Abhydrolase_1e7odr31 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
H [auth 2]Spuma_A9PTasee7odr21 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
G [auth 1]Spuma_A9PTasee7odr11 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
F [auth 0]Spuma_A9PTasee7odr01 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
EB [auth s]Spuma_A9PTasee7odrs1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
DB [auth r]Spuma_A9PTasee7odrr1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
CB [auth q]Ribosomal_L12_Ne7odrq1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
BB [auth p]Spuma_A9PTasee7odrp1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
AB [auth o]Spuma_A9PTasee7odro1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
ZA [auth m]Ribosomal_L12_Ne7odrm1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
E [auth y]Spuma_A9PTasee7odry1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
WA [auth j]Spuma_A9PTasee7odrj1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
VA [auth i]Spuma_A9PTasee7odri1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
UA [auth h]Abhydrolase_1e7odrh1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
SA [auth f]Spuma_A9PTasee7odrf1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
RA [auth e]Spuma_A9PTasee7odre1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
QA [auth d]Spuma_A9PTasee7odrd1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
OA [auth b]Spuma_A9PTasee7odrb1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
NA [auth a]Spuma_A9PTasee7odra1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
D [auth x]Ribosomal_L12_Ne7odrx1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
LA [auth Y]Spuma_A9PTasee7odrY1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
KA [auth X]Spuma_A9PTasee7odrX1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
JA [auth W]Ribosomal_L12_Ne7odrW1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
IA [auth V]Spuma_A9PTasee7odrV1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
HA [auth U]Spuma_A9PTasee7odrU1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
GA [auth T]Spuma_A9PTasee7odrT1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
FA [auth S]Spuma_A9PTasee7odrS1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
EA [auth R]Abhydrolase_1e7odrR1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
CA [auth P]Spuma_A9PTasee7odrP1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
BA [auth O]Abhydrolase_1e7odrO1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
AA [auth N]Spuma_A9PTasee7odrN1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
Z [auth M]Spuma_A9PTasee7odrM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
Y [auth L]Spuma_A9PTasee7odrL1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
W [auth J]Spuma_A9PTasee7odrJ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
V [auth I]Ribosomal_L12_Ne7odrI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
U [auth H]Spuma_A9PTasee7odrH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
B [auth v]Spuma_A9PTasee7odrv1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
S [auth E]Ribosomal_L12_Ne7odrE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
R [auth D]Spuma_A9PTasee7odrD1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
O [auth 9]Spuma_A9PTasee7odr91 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
N [auth 8]Ribosomal_L12_Ne7odr81 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
M [auth 7]Spuma_A9PTasee7odr71 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
J [auth 4]Spuma_A9PTasee7odr41 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Spuma_A9PTaseECOD (v294.1)
A [auth u]Ribosomal_L12_Ne7odru1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
L [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding proteinDomain
T [auth F]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
T [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
X [auth K]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
X [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
DA [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
MA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
I [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
H [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
F [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
LA [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
KA [auth X]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/FThis is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) posi ...This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA [1,2].
Domain
KA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
JA [auth W]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
IA [auth V]PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family
IA [auth V]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
IA [auth V]PF00467KOW motif (KOW)KOW motif- Family
HA [auth U]PF02410Ribosomal silencing factor during starvation (RsfS)Ribosomal silencing factor during starvation- Family
HA [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
GA [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
FA [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
EA [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
EA [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
CA [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
BA [auth O]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
BA [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
AA [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
Z [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Y [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
Y [auth L]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
W [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
W [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
W [auth J]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
V [auth I]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
V [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
U [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
U [auth H]PF25131Large ribosomal subunit protein bL9m N-terminal domain (bL9m_N)Large ribosomal subunit protein bL9m N-terminal domainThis is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sh ...This is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sheets at each ends connected by a loop.
Domain
U [auth H]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
S [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
S [auth E]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
R [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
R [auth D]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
R [auth D]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
J [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth w]Acyl carrier protein, mitochondrial
K [auth 5]39S ribosomal protein L37, mitochondrial
L [auth 6]39S ribosomal protein L38, mitochondrial-
P [auth A]16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA---
T [auth F]39S ribosomal protein L4, mitochondrial
X [auth K]39S ribosomal protein L13, mitochondrial
DA [auth Q]39S ribosomal protein L19, mitochondrial
MA [auth Z]39S ribosomal protein L30, mitochondrial
PA [auth c]39S ribosomal protein L44, mitochondrial
TA [auth g]39S ribosomal protein L49, mitochondrial
XA [auth k]39S ribosomal protein L53, mitochondrial-
I [auth 3]39S ribosomal protein L35, mitochondrial
H [auth 2]39S ribosomal protein L34, mitochondrial
G [auth 1]39S ribosomal protein L33, mitochondrial
F [auth 0]39S ribosomal protein L32, mitochondrial
EB [auth s]39S ribosomal protein S30, mitochondrial
DB [auth r]39S ribosomal protein S18a, mitochondrial
CB [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1
BB [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
AB [auth o]Ribosomal protein 63, mitochondrial
ZA [auth m]39S ribosomal protein L55, mitochondrial
YA [auth l]39S ribosomal protein L54, mitochondrial
E [auth y]Transcription termination factor 4, mitochondrial
WA [auth j]39S ribosomal protein L52, mitochondrial
VA [auth i]39S ribosomal protein L51, mitochondrial
UA [auth h]39S ribosomal protein L50, mitochondrial-
SA [auth f]39S ribosomal protein L48, mitochondrial-
RA [auth e]39S ribosomal protein L46, mitochondrial
QA [auth d]39S ribosomal protein L45, mitochondrial
OA [auth b]39S ribosomal protein L43, mitochondrial
NA [auth a]39S ribosomal protein L42, mitochondrial
D [auth x]5-methylcytosine rRNA methyltransferase NSUN4
LA [auth Y]39S ribosomal protein L47, mitochondrial
KA [auth X]39S ribosomal protein L28, mitochondrial
JA [auth W]39S ribosomal protein L27, mitochondrial
IA [auth V]39S ribosomal protein L24, mitochondrial
HA [auth U]39S ribosomal protein L23, mitochondrial
GA [auth T]39S ribosomal protein L22, mitochondrial
FA [auth S]39S ribosomal protein L21, mitochondrial
EA [auth R]39S ribosomal protein L20, mitochondrial
CA [auth P]39S ribosomal protein L18, mitochondrial
BA [auth O]39S ribosomal protein L17, mitochondrial
AA [auth N]39S ribosomal protein L16, mitochondrial
Z [auth M]39S ribosomal protein L15, mitochondrial
Y [auth L]39S ribosomal protein L14, mitochondrial
W [auth J]39S ribosomal protein L11, mitochondrial
V [auth I]39S ribosomal protein L10, mitochondrial
U [auth H]39S ribosomal protein L9, mitochondrial
B [auth v]MIEF1 upstream open reading frame protein
S [auth E]39S ribosomal protein L3, mitochondrial
R [auth D]39S ribosomal protein L2, mitochondrial
Q [auth B]mitochondrial tRNAVal---
O [auth 9]39S ribosomal protein L41, mitochondrial
N [auth 8]39S ribosomal protein L40, mitochondrial
M [auth 7]39S ribosomal protein L39, mitochondrial
J [auth 4]39S ribosomal protein L36, mitochondrial
A [auth u]Mitochondrial assembly of ribosomal large subunit protein 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth w]IPR006162Phosphopantetheine attachment sitePTM
C [auth w]IPR036736ACP-like superfamilyHomologous Superfamily
C [auth w]IPR009081Phosphopantetheine binding ACP domainDomain
C [auth w]IPR003231Acyl carrier proteinFamily
K [auth 5]IPR052482Mitochondrial large ribosomal subunit mL37Family
K [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
L [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
L [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
L [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
T [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
T [auth F]IPR002136Large ribosomal subunit protein uL4Family
T [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
X [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth K]IPR005822Large ribosomal subunit protein uL13Family
X [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
X [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth Q]IPR001857Large ribosomal subunit protein bL19Family
DA [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
DA [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
MA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
MA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
PA [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
PA [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
PA [auth c]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
PA [auth c]IPR014720Double-stranded RNA-binding domainDomain
TA [auth g]IPR007740Large ribosomal subunit protein mL49Family
XA [auth k]IPR019716Large ribosomal subunit protein mL53Family
XA [auth k]IPR052473Mitochondrial Large Ribosomal Subunit mL53Family
I [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
I [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
I [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
H [auth 2]IPR000271Large ribosomal subunit protein bL34Family
G [auth 1]IPR052008Mitochondrial ribosomal protein bL33Family
G [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
G [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
G [auth 1]IPR001705Large ribosomal subunit protein bL33Family
F [auth 0]IPR002677Large ribosomal subunit protein bL32Family
F [auth 0]IPR051991Mitochondrial ribosomal protein bL32Family
F [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EB [auth s]IPR039982Large ribosomal subunit protein mL65Family
EB [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
DB [auth r]IPR001648Small ribosomal subunit protein bS18Family
DB [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
CB [auth q]IPR018472Large ribosomal subunit protein mL64Family
CB [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
BB [auth p]IPR052104Mitochondrial Release Factor mL62Family
BB [auth p]IPR000352Peptide chain release factor class IDomain
AB [auth o]IPR016576Large ribosomal subunit protein mL63Family
ZA [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
ZA [auth m]IPR018615Large ribosomal subunit protein mL55Family
YA [auth l]IPR013870Large ribosomal subunit protein mL54Family
E [auth y]IPR038538MTERF superfamily, mitochondrial/chloroplasticHomologous Superfamily
E [auth y]IPR003690Transcription termination factor, mitochondrial/chloroplasticFamily
WA [auth j]IPR034596Large ribosomal subunit protein mL52Family
VA [auth i]IPR019373Large ribosomal subunit protein mL51Family
UA [auth h]IPR018305Large ribosomal subunit protein mL50Family
SA [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
SA [auth f]IPR027487Large ribosomal subunit protein mL48Family
SA [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
RA [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
RA [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
RA [auth e]IPR040008Large ribosomal subunit protein mL46Family
RA [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
QA [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
QA [auth d]IPR007379Tim44-like domainDomain
QA [auth d]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
OA [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
OA [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
OA [auth b]IPR039927Large ribosomal subunit protein mL43Family
NA [auth a]IPR019346Large ribosomal subunit protein mL42Family
D [auth x]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
D [auth x]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
D [auth x]IPR023267RNA (C5-cytosine) methyltransferaseFamily
D [auth x]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
LA [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
LA [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
KA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
KA [auth X]IPR026569Large ribosomal subunit protein bL28Family
KA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
JA [auth W]IPR001684Large ribosomal subunit protein bL27Family
IA [auth V]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
IA [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IA [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth V]IPR003256Large ribosomal subunit protein uL24Family
IA [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IA [auth V]IPR005824KOWDomain
IA [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
HA [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
HA [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
HA [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
GA [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
GA [auth T]IPR001063Large ribosomal subunit protein uL22Family
GA [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
FA [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
FA [auth S]IPR001787Large ribosomal subunit protein bL21Family
FA [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
EA [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
EA [auth R]IPR005813Large ribosomal subunit protein bL20Family
CA [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
CA [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
CA [auth P]IPR057268Large ribosomal subunit protein uL18Family
BA [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
BA [auth O]IPR000456Large ribosomal subunit protein bL17Family
AA [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
AA [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
AA [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
AA [auth N]IPR047873Large ribosomal subunit protein uL16Family
Z [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth M]IPR030878Large ribosomal subunit protein uL15Family
Z [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Z [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
Y [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth L]IPR000218Large ribosomal subunit protein uL14Family
W [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
W [auth J]IPR000911Ribosomal protein uL11Family
W [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
W [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
W [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
W [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
V [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
V [auth I]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
V [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
U [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
U [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
U [auth H]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
U [auth H]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
U [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
U [auth H]IPR000244Large ribosomal subunit protein bL9Family
B [auth v]IPR008011Complex 1 LYR protein domainDomain
B [auth v]IPR045300MIEF1-MP, LYR domainDomain
S [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
S [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
S [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
S [auth E]IPR000597Large ribosomal subunit protein uL3Family
R [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
R [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
R [auth D]IPR002171Large ribosomal subunit protein uL2Family
O [auth 9]IPR019189Large ribosomal subunit protein mL41Family
N [auth 8]IPR019192Large ribosomal subunit protein mL40Family
N [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
M [auth 7]IPR012676TGS-likeHomologous Superfamily
M [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
M [auth 7]IPR050062Proline-tRNA synthetaseFamily
M [auth 7]IPR004095TGSDomain
M [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
J [auth 4]IPR000473Large ribosomal subunit protein bL36Family
J [auth 4]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
J [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
A [auth u]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
A [auth u]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth w]Pharos:  O14561
K [auth 5]Pharos:  Q9BZE1
T [auth F]Pharos:  Q9BYD3
X [auth K]Pharos:  Q9BYD1
DA [auth Q]Pharos:  P49406
MA [auth Z]Pharos:  Q8TCC3
PA [auth c]Pharos:  Q9H9J2
TA [auth g]Pharos:  Q13405
I [auth 3]Pharos:  Q9NZE8
H [auth 2]Pharos:  Q9BQ48
G [auth 1]Pharos:  O75394
F [auth 0]Pharos:  Q9BYC8
EB [auth s]Pharos:  Q9NP92
DB [auth r]Pharos:  Q9NVS2
CB [auth q]Pharos:  Q8TAE8
BB [auth p]Pharos:  Q14197
AB [auth o]Pharos:  Q9BQC6
ZA [auth m]Pharos:  Q7Z7F7
YA [auth l]Pharos:  Q6P161
E [auth y]Pharos:  Q7Z6M4
WA [auth j]Pharos:  Q86TS9
VA [auth i]Pharos:  Q4U2R6
UA [auth h]Pharos:  Q8N5N7
SA [auth f]Pharos:  Q96GC5
QA [auth d]Pharos:  Q9BRJ2
OA [auth b]Pharos:  Q8N983
NA [auth a]Pharos:  Q9Y6G3
D [auth x]Pharos:  Q96CB9
LA [auth Y]Pharos:  Q9HD33
KA [auth X]Pharos:  Q13084
JA [auth W]Pharos:  Q9P0M9
IA [auth V]Pharos:  Q96A35
HA [auth U]Pharos:  Q16540
GA [auth T]Pharos:  Q9NWU5
EA [auth R]Pharos:  Q9BYC9
CA [auth P]Pharos:  Q9H0U6
BA [auth O]Pharos:  Q9NRX2
AA [auth N]Pharos:  Q9NX20
Z [auth M]Pharos:  Q9P015
Y [auth L]Pharos:  Q6P1L8
W [auth J]Pharos:  Q9Y3B7
V [auth I]Pharos:  Q7Z7H8
U [auth H]Pharos:  Q9BYD2
B [auth v]Pharos:  L0R8F8
S [auth E]Pharos:  P09001
R [auth D]Pharos:  Q5T653
O [auth 9]Pharos:  Q8IXM3
N [auth 8]Pharos:  Q9NQ50
M [auth 7]Pharos:  Q9NYK5
J [auth 4]Pharos:  Q9P0J6
A [auth u]Pharos:  Q96EH3