7O9M

Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth K]SCOP2B SuperfamilyRibosomal protein L138100460 3001134 SCOP2B (2022-06-29)
K [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like8072072 3000433 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L178033689 3000995 SCOP2B (2022-06-29)
BA [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8075050 3001320 SCOP2B (2022-06-29)
EA [auth 4]SCOP2B SuperfamilyRibosomal protein L368083324 3001346 SCOP2B (2022-06-29)
JA [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like8053893 3002240 SCOP2B (2022-06-29)
BB [auth n]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8076347 3000118 SCOP2B (2022-06-29)
FB [auth u]SCOP2B SuperfamilyNucleotidyltransferase-like8100396 3000129 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L48080706 3001146 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth K]Ribosomal_L13e7o9mK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
K [auth L]Ribosomal_L14e7o9mL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
L [auth M]Ribosomal_L27Ae7o9mM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
M [auth N]Ribosomal_L16e7o9mN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
N [auth O]Ribosomal_L17e7o9mO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
O [auth P]Ribosomal_L18pe7o9mP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
P [auth Q]Ribosomal_L19e7o9mQ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
Q [auth R]Ribosomal_L20e7o9mR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
R [auth S]Ribosomal_L21pe7o9mS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
S [auth T]Ribosomal_L22e7o9mT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
T [auth U]Ribosomal_L23_2e7o9mU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
U [auth V]ribosomal_L24_1e7o9mV1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
V [auth W]Ribosomal_L27e7o9mW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
W [auth X]Ribosomal_L28_1e7o9mX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28_1ECOD (1.6)
X [auth Y]MRP-L47e7o9mY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
Y [auth Z]Ribosomal_L30e7o9mZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
Z [auth a]MRP-S32e7o9ma1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
AA [auth 0]KOG4080e7o9m01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
BA [auth 1]Ribosomal_L33e7o9m11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
CA [auth 2]Ribosomal_L34e7o9m21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
CMnmE_helical_2nde7o9mC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
DA [auth 3]Ribosomal_L35pe7o9m31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
EA [auth 4]Ribosomal_L36e7o9m41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
FA [auth 5]PDCD9e7o9m51 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
GA [auth 6]PBPe7o9m61 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
HA [auth 7]TGSe7o9m71 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
HA [auth 7]tRNA_SADe7o9m72 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
IA [auth 8]MRP-L28e7o9m81 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: MRP-L28ECOD (1.6)
JA [auth 9]MRP-L27e7o9m91 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
KA [auth b]L51_S25_CI-B8e7o9mb1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
LA [auth c]Ribonucleas_3_3e7o9mc1 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
LA [auth c]dsrme7o9mc2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
MA [auth d]Tim44e7o9md1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
DRibosomal_L2e7o9mD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
DRibosomal_L2_Ce7o9mD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
NA [auth e]MRP-L46e7o9me1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
OA [auth f]Ribosomal_S10_2e7o9mf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_2ECOD (1.6)
PA [auth g]Img2e7o9mg1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
QA [auth h]Ribosomal_L50e7o9mh1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
RA [auth i]MRP-L51e7o9mi1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
SA [auth j]EUF08791e7o9mj1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
TA [auth k]MRP_L53e7o9mk1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)
VA [auth m]Mitoc_L55e7o9mm1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Mitoc_L55ECOD (1.6)
WA [auth o]MRP-63e7o9mo1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
ERibosomal_L3e7o9mE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
XA [auth p]RF-1_Ne7o9mp1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
YA [auth q]CR6_interacte7o9mq1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
ZA [auth r]Ribosomal_S18e7o9mr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
AB [auth s]PDCD9e7o9ms1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
BB [auth n]FtsJe7o9mn1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FtsJECOD (1.6)
CB [auth A1]Methyltr_RsmB-F_1e7o9mA11 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltr_RsmB-F_1ECOD (1.6)
DB [auth A2]mTERFe7o9mA21 A: alpha superhelicesX: Mitochondrial mTERF-likeH: Mitochondrial mTERF (From Topology)T: Mitochondrial mTERFF: mTERFECOD (1.6)
EB [auth v]Complex1_LYRe7o9mv1 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: Complex1_LYRECOD (1.6)
FB [auth u]RsfSe7o9mu1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: RsfSECOD (1.6)
GB [auth t1]Ribosomal_L12_N_1e7o9mt11 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
HB [auth t2]Ribosomal_L12_N_1e7o9mt21 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
IB [auth t3]Ribosomal_L12_N_1e7o9mt31 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
JB [auth t4]Ribosomal_L12_N_1e7o9mt41 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
KB [auth t6]Ribosomal_L12_N_1e7o9mt61 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
LB [auth t5]Ribosomal_L12_N_1e7o9mt51 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_N_1ECOD (1.6)
FRibosomal_L4e7o9mF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
MB [auth w]PP-bindinge7o9mw1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
G [auth H]Ribosomal_L9_N_1e7o9mH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
I [auth J]Ribosomal_L11e7o9mJ2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
I [auth J]Ribosomal_L11_Ne7o9mJ1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
K [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
L [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
M [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
N [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
O [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
P [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Q [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
R [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
S [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
U [auth V]PF00467KOW motif (KOW)KOW motif- Family
V [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
W [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
X [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
Y [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Z [auth a]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
AA [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CA [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
DA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
EA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
FA [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
GA [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
IA [auth 8]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family
JA [auth 9]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
KA [auth b]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
MA [auth d]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth e]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
OA [auth f]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PA [auth g]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
QA [auth h]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
RA [auth i]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
SA [auth j]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
TA [auth k]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
UA [auth l]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
VA [auth m]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
WA [auth o]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
YA [auth q]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
ZA [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
AB [auth s]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
BB [auth n]PF01728FtsJ-like methyltransferase (FtsJ)FtsJ-like methyltransferase- Family
CB [auth A1]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/F- Family
DB [auth A2]PF02536mTERF (mTERF)mTERF- Family
EB [auth v]PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family
FB [auth u]PF02410Ribosomal silencing factor during starvation (RsfS)Ribosomal silencing factor during starvation- Family
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
MB [auth w]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
G [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
H [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
I [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
I [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S rRNA---
J [auth K]39S ribosomal protein L13, mitochondrial
K [auth L]39S ribosomal protein L14, mitochondrial
L [auth M]39S ribosomal protein L15, mitochondrial
M [auth N]39S ribosomal protein L16, mitochondrial
N [auth O]39S ribosomal protein L17, mitochondrial
O [auth P]Mitochondrial ribosomal protein L18, isoform CRA_b
P [auth Q]39S ribosomal protein L19, mitochondrial
Q [auth R]39S ribosomal protein L20, mitochondrial
R [auth S]39S ribosomal protein L21, mitochondrial
S [auth T]39S ribosomal protein L22, mitochondrial
MT-TRNAVAL---
T [auth U]39S ribosomal protein L23, mitochondrial
U [auth V]39S ribosomal protein L24, mitochondrial
V [auth W]39S ribosomal protein L27, mitochondrial
W [auth X]39S ribosomal protein L28, mitochondrial
X [auth Y]39S ribosomal protein L47, mitochondrial
Y [auth Z]39S ribosomal protein L30, mitochondrial
Z [auth a]39S ribosomal protein L42, mitochondrial
AA [auth 0]39S ribosomal protein L32, mitochondrial
BA [auth 1]39S ribosomal protein L33, mitochondrial
CA [auth 2]39S ribosomal protein L34, mitochondrial
Mitochondrial ribosome-associated GTPase 1
DA [auth 3]39S ribosomal protein L35, mitochondrial
EA [auth 4]39S ribosomal protein L36, mitochondrial
FA [auth 5]39S ribosomal protein L37, mitochondrial
GA [auth 6]39S ribosomal protein L38, mitochondrial-
HA [auth 7]39S ribosomal protein L39, mitochondrial
IA [auth 8]39S ribosomal protein L40, mitochondrial
JA [auth 9]39S ribosomal protein L41, mitochondrial
KA [auth b]39S ribosomal protein L43, mitochondrial
LA [auth c]39S ribosomal protein L44, mitochondrial
MA [auth d]39S ribosomal protein L45, mitochondrial
39S ribosomal protein L2, mitochondrial
NA [auth e]39S ribosomal protein L46, mitochondrial
OA [auth f]39S ribosomal protein L48, mitochondrial-
PA [auth g]39S ribosomal protein L49, mitochondrial
QA [auth h]39S ribosomal protein L50, mitochondrial-
RA [auth i]39S ribosomal protein L51, mitochondrial
SA [auth j]39S ribosomal protein L52, mitochondrial
TA [auth k]39S ribosomal protein L53, mitochondrial-
UA [auth l]39S ribosomal protein L54, mitochondrial
VA [auth m]39S ribosomal protein L55, mitochondrial
WA [auth o]Ribosomal protein 63, mitochondrial
39S ribosomal protein L3, mitochondrial
XA [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
YA [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1-
ZA [auth r]39S ribosomal protein S18a, mitochondrial
AB [auth s]39S ribosomal protein S30, mitochondrial
BB [auth n]rRNA methyltransferase 2, mitochondrial
CB [auth A1]5-methylcytosine rRNA methyltransferase NSUN4
DB [auth A2]Transcription termination factor 4, mitochondrial
EB [auth v]MIEF1 upstream open reading frame protein
FB [auth u]Mitochondrial assembly of ribosomal large subunit protein 1
39S ribosomal protein L12, mitochondrial
39S ribosomal protein L4, mitochondrial
MB [auth w]Acyl carrier protein, mitochondrial
NB [auth UNK]Unknown residues---
G [auth H]39S ribosomal protein L9, mitochondrial
H [auth I]39S ribosomal protein L10, mitochondrial
I [auth J]39S ribosomal protein L11, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth K]IPR005822Large ribosomal subunit protein uL13Family
J [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
K [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth L]IPR000218Large ribosomal subunit protein uL14Family
L [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
L [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth M]IPR030878Large ribosomal subunit protein uL15Family
L [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
M [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth N]IPR047873Large ribosomal subunit protein uL16Family
N [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth O]IPR000456Large ribosomal subunit protein bL17Family
O [auth P]IPR005484Large ribosomal subunit protein uL18Family
O [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
P [auth Q]IPR001857Large ribosomal subunit protein bL19Family
P [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth R]IPR005813Large ribosomal subunit protein bL20Family
R [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth S]IPR001787Large ribosomal subunit protein bL21Family
R [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
S [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth T]IPR001063Large ribosomal subunit protein uL22Family
T [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth V]IPR003256Large ribosomal subunit protein uL24Family
U [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth V]IPR005824KOWDomain
U [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth W]IPR001684Large ribosomal subunit protein bL27Family
W [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
W [auth X]IPR026569Large ribosomal subunit protein bL28Family
W [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
X [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
Y [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Y [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth a]IPR019346Large ribosomal subunit protein mL42Family
AA [auth 0]IPR002677Large ribosomal subunit protein bL32Family
AA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BA [auth 1]IPR001705Large ribosomal subunit protein bL33Family
CA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
IPR019991GTP-binding protein, ribosome biogenesisFamily
IPR016478GTPase, MTG1Family
IPR006073GTP binding domainDomain
IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
DA [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
DA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
EA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
FA [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
GA [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
GA [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
GA [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
HA [auth 7]IPR012676TGS-likeHomologous Superfamily
HA [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
HA [auth 7]IPR004095TGSDomain
HA [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
IA [auth 8]IPR019192Large ribosomal subunit protein mL40Family
IA [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
JA [auth 9]IPR019189Large ribosomal subunit protein mL41Family
KA [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
KA [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
KA [auth b]IPR039927Large ribosomal subunit protein mL43Family
LA [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
LA [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
LA [auth c]IPR014720Double-stranded RNA-binding domainDomain
MA [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
MA [auth d]IPR007379Tim44-like domainDomain
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR002171Large ribosomal subunit protein uL2Family
NA [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
NA [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
NA [auth e]IPR040008Large ribosomal subunit protein mL46Family
NA [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
OA [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
OA [auth f]IPR027487Large ribosomal subunit protein mL48Family
OA [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PA [auth g]IPR007740Large ribosomal subunit protein mL49Family
QA [auth h]IPR018305Large ribosomal subunit protein mL50Family
RA [auth i]IPR019373Large ribosomal subunit protein mL51Family
SA [auth j]IPR034596Large ribosomal subunit protein mL52Family
TA [auth k]IPR019716Large ribosomal subunit protein mL53Family
UA [auth l]IPR013870Large ribosomal subunit protein mL54Family
VA [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
VA [auth m]IPR018615Large ribosomal subunit protein mL55Family
WA [auth o]IPR016576Large ribosomal subunit protein mL63Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
XA [auth p]IPR000352Peptide chain release factor class IDomain
YA [auth q]IPR018472Large ribosomal subunit protein mL64Family
YA [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
ZA [auth r]IPR001648Small ribosomal subunit protein bS18Family
ZA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
AB [auth s]IPR039982Large ribosomal subunit protein mL65Family
AB [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
BB [auth n]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
BB [auth n]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
BB [auth n]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CB [auth A1]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
CB [auth A1]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CB [auth A1]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
CB [auth A1]IPR023267RNA (C5-cytosine) methyltransferaseFamily
DB [auth A2]IPR038538MTERF superfamily, mitochondrial/chloroplasticHomologous Superfamily
DB [auth A2]IPR003690Transcription termination factor, mitochondrial/chloroplasticFamily
EB [auth v]IPR008011Complex 1 LYR protein domainDomain
EB [auth v]IPR045300MIEF1-MP, LYR domainDomain
FB [auth u]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
FB [auth u]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
MB [auth w]IPR006162Phosphopantetheine attachment sitePTM
MB [auth w]IPR009081Phosphopantetheine binding ACP domainDomain
MB [auth w]IPR036736ACP-like superfamilyHomologous Superfamily
MB [auth w]IPR003231Acyl carrier proteinFamily
G [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
G [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
G [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
G [auth H]IPR000244Large ribosomal subunit protein bL9Family
H [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
H [auth I]IPR001790Large ribosomal subunit protein uL10Family
H [auth I]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
I [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
I [auth J]IPR000911Ribosomal protein uL11Family
I [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
I [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
I [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
I [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
J [auth K]PharosQ9BYD1
K [auth L]PharosQ6P1L8
L [auth M]PharosQ9P015
M [auth N]PharosQ9NX20
N [auth O]PharosQ9NRX2
P [auth Q]PharosP49406
Q [auth R]PharosQ9BYC9
T [auth U]PharosQ16540
U [auth V]PharosQ96A35
V [auth W]PharosQ9P0M9
W [auth X]PharosQ13084
X [auth Y]PharosQ9HD33
Y [auth Z]PharosQ8TCC3
Z [auth a]PharosQ9Y6G3
AA [auth 0]PharosQ9BYC8
BA [auth 1]PharosO75394
CA [auth 2]PharosQ9BQ48
PharosQ9BT17
DA [auth 3]PharosQ9NZE8
EA [auth 4]PharosQ9P0J6
FA [auth 5]PharosQ9BZE1
HA [auth 7]PharosQ9NYK5
IA [auth 8]PharosQ9NQ50
JA [auth 9]PharosQ8IXM3
KA [auth b]PharosQ8N983
LA [auth c]PharosQ9H9J2
MA [auth d]PharosQ9BRJ2
PharosQ5T653
OA [auth f]PharosQ96GC5
PA [auth g]PharosQ13405
QA [auth h]PharosQ8N5N7
RA [auth i]PharosQ4U2R6
SA [auth j]PharosQ86TS9
UA [auth l]PharosQ6P161
VA [auth m]PharosQ7Z7F7
WA [auth o]PharosQ9BQC6
PharosP09001
XA [auth p]PharosQ14197
YA [auth q]PharosQ8TAE8
ZA [auth r]PharosQ9NVS2
AB [auth s]PharosQ9NP92
BB [auth n]PharosQ9UI43
CB [auth A1]PharosQ96CB9
DB [auth A2]PharosQ7Z6M4
EB [auth v]PharosL0R8F8
FB [auth u]PharosQ96EH3
PharosP52815
PharosQ9BYD3
MB [auth w]PharosO14561
G [auth H]PharosQ9BYD2
H [auth I]PharosQ7Z7H8
I [auth J]PharosQ9Y3B7