7O81

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
M [auth AZ]	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8097826	3001397	SCOP2B (2022-06-29)
N [auth Aa]	SCOP2B Superfamily	Ribosomal S3Ae-like	8053216	3002166	SCOP2B (2022-06-29)
R [auth Ae]	SCOP2B Superfamily	Ribosomal protein S7	8066001	3000799	SCOP2B (2022-06-29)
U [auth Ah]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8053075	3000433	SCOP2B (2022-06-29)
W [auth Aj]	SCOP2B Superfamily	Winged helix DNA-binding domain	8055720	3000034	SCOP2B (2022-06-29)
X [auth Ak]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052707	3000135	SCOP2B (2022-06-29)
X [auth Ak]	SCOP2B Superfamily	Ribosomal S17 N-terminal domain-like	8052708	3002138	SCOP2B (2022-06-29)
Y [auth Al]	SCOP2B Superfamily	L30e-like	8063980	3001739	SCOP2B (2022-06-29)
Z [auth Am]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8052971	3001284	SCOP2B (2022-06-29)
Z [auth Am]	SCOP2B Superfamily	Homeodomain-like	8052970	3000001	SCOP2B (2022-06-29)
AA [auth An]	SCOP2B Superfamily	Translational machinery components	8097824	3000571	SCOP2B (2022-06-29)
CA [auth Ap]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8082683	3000100	SCOP2B (2022-06-29)
C [auth AB]	SCOP2B Superfamily	Nucleic acid-binding proteins	8095265	3000135	SCOP2B (2022-06-29)
EA [auth Ar]	SCOP2B Superfamily	S13-like H2TH domain	8101439	3000053	SCOP2B (2022-06-29)
GA [auth At]	SCOP2B Superfamily	Ribosomal protein S10	8097814	3001336	SCOP2B (2022-06-29)
IA [auth Av]	SCOP2B Superfamily	Ribosomal protein S8	8079081	3000709	SCOP2B (2022-06-29)
LA [auth Ay]	SCOP2B Superfamily	Winged helix DNA-binding domain	8090991	3000034	SCOP2B (2022-06-29)
RA [auth BB]	SCOP2B Superfamily	Translational proteins	8078357	3000811	SCOP2B (2022-06-29)
SA [auth BC]	SCOP2B Superfamily	60S ribosomal protein L4 C-terminal domain-like	8052828	3002143	SCOP2B (2022-06-29)
SA [auth BC]	SCOP2B Superfamily	Ribosomal protein L4	8052829	3001146	SCOP2B (2022-06-29)
TA [auth BD]	SCOP2B Superfamily	Translational machinery components	8052886	3000571	SCOP2B (2022-06-29)
YA [auth BI]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8097320	3000884	SCOP2B (2022-06-29)
ZA [auth BJ]	SCOP2B Superfamily	RL5-like	8073894	3001709	SCOP2B (2022-06-29)
DB [auth BN]	SCOP2B Superfamily	Ribosomal proteins S24e L23 and L15e	8082477	3000210	SCOP2B (2022-06-29)
FB [auth BP]	SCOP2B Superfamily	Ribosomal protein L22	8097828	3001078	SCOP2B (2022-06-29)
LB [auth BV]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8072048	3000433	SCOP2B (2022-06-29)
NB [auth BX]	SCOP2B Superfamily	Ribosomal proteins S24e L23 and L15e	8095966	3000210	SCOP2B (2022-06-29)
OB [auth BY]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8076754	3000334	SCOP2B (2022-06-29)
PB [auth BZ]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8053047	3000334	SCOP2B (2022-06-29)
QB [auth Ba]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8097818	3001045	SCOP2B (2022-06-29)
G [auth AF]	SCOP2B Superfamily	WD40 repeat-like	8097816	3001694	SCOP2B (2022-06-29)
SB [auth Bc]	SCOP2B Superfamily	L30e-like	8094953	3001739	SCOP2B (2022-06-29)
UB [auth Be]	SCOP2B Superfamily	Ribosomal protein L32e	8102090	3000982	SCOP2B (2022-06-29)
VB [auth Bf]	SCOP2B Superfamily	Translational proteins	8093714	3000811	SCOP2B (2022-06-29)
WB [auth Bg]	SCOP2 Family	Ribosomal protein L34e-like	8103327	4006193	SCOP2 (2022-06-29)
WB [auth Bg]	SCOP2 Superfamily	Ribosomal protein L34e-like	8103328	3002203	SCOP2 (2022-06-29)
YB [auth Bi]	SCOP2B Superfamily	Ribosomal protein L36e	8053119	3002161	SCOP2B (2022-06-29)
AC [auth Bk]	SCOP2B Superfamily	Ribosomal L38e protein-like	8093716	3002206	SCOP2B (2022-06-29)
H [auth AG]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8052584	3000068	SCOP2B (2022-06-29)
BC [auth Bl]	SCOP2B Superfamily	Ribosomal protein L39e	8095597	3001756	SCOP2B (2022-06-29)
EC [auth Bp]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8101435	3001320	SCOP2B (2022-06-29)
IC [auth Bv]	SCOP2B Superfamily	Ribosomal protein L1p/L10e-like	8065344	3001911	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth AZ]	PF00318,PF16122	e7o81AZ1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318,PF16122	ECOD (1.6)
N [auth Aa]	PF01015	e7o81Aa2	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain (From Topology)	T: 40S ribosomal protein S3A N-terminal domain	F: PF01015	ECOD (1.6)
N [auth Aa]	PF01015	e7o81Aa1	A: a+b two layers	X: T-fold	H: 40S ribosomal protein S3A C-terminal domain (From Topology)	T: 40S ribosomal protein S3A C-terminal domain	F: PF01015	ECOD (1.6)
O [auth Ab]	PF03719	e7o81Ab1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
O [auth Ab]	PF00333	e7o81Ab3	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
O [auth Ab]	PF00333	e7o81Ab2	A: extended segments	X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	T: N-terminal region in 40S ribosomal protein rpS2 (S5p)	F: PF00333	ECOD (1.6)
P [auth Ac]	PF00189	e7o81Ac2	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: PF00189	ECOD (1.6)
P [auth Ac]	PF07650	e7o81Ac1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: PF07650	ECOD (1.6)
Q [auth Ad]	PF00900	e7o81Ad3	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00900	ECOD (1.6)
Q [auth Ad]	PF00467,PF16121	e7o81Ad1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF16121	ECOD (1.6)
Q [auth Ad]	PF00900,PF01479,PF08071	e7o81Ad2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00900,PF01479,PF08071	ECOD (1.6)
R [auth Ae]	PF00177	e7o81Ae1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
S [auth Af]	PF01092	e7o81Af1	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: PF01092	ECOD (1.6)
B [auth AA]	PF01667	e7o81AA1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01667	ECOD (1.6)
T [auth Ag]	PF01251	e7o81Ag2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: PF01251	ECOD (1.6)
U [auth Ah]	PF01201	e7o81Ah1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF01201	ECOD (1.6)
V [auth Ai]	PF00163,PF01479	e7o81Ai1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
W [auth Aj]	PF03501	e7o81Aj1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03501	ECOD (1.6)
X [auth Ak]	PF00366,PF16205	e7o81Ak1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366,PF16205	ECOD (1.6)
Y [auth Al]	PF01248	e7o81Al1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
Z [auth Am]	PF08069	e7o81Am1	A: alpha arrays	X: HTH	H: 40S ribosomal protein S13 N-terminal domain (From Topology)	T: 40S ribosomal protein S13 N-terminal domain	F: PF08069	ECOD (1.6)
Z [auth Am]	PF00312	e7o81Am2	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
AA [auth An]	PF00411	e7o81An1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
BA [auth Ao]	PF00203	e7o81Ao1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: PF00203	ECOD (1.6)
CA [auth Ap]	PF00380	e7o81Ap1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF00380	ECOD (1.6)
C [auth AB]	PF01200	e7o81AB1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF01200	ECOD (1.6)
DA [auth Aq]	PF00833	e7o81Aq1	A: alpha arrays	X: HTH	H: HTH	T: FF domain	F: PF00833	ECOD (1.6)
EA [auth Ar]	PF00416	e7o81Ar1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: PF00416	ECOD (1.6)
FA [auth As]	PF01090	e7o81As1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01090	ECOD (1.6)
GA [auth At]	PF00338	e7o81At1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PF00338	ECOD (1.6)
HA [auth Au]	PF01249	e7o81Au1	A: a+b two layers	X: 40S ribosomal protein rpS21 (S21e) (From Topology)	H: 40S ribosomal protein rpS21 (S21e) (From Topology)	T: 40S ribosomal protein rpS21 (S21e)	F: PF01249	ECOD (1.6)
IA [auth Av]	PF00410	e7o81Av1	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
IA [auth Av]	PF00410	e7o81Av2	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
JA [auth Aw]	PF00164	e7o81Aw1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
KA [auth Ax]	PF01282	e7o81Ax1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF01282	ECOD (1.6)
LA [auth Ay]	PF03297	e7o81Ay1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF03297	ECOD (1.6)
MA [auth Az]	PF05162	e7o81Az1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: PF05162	ECOD (1.6)
D [auth AC]	PF01599	e7o81AC1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01599	ECOD (1.6)
QA [auth BA]	PF00181	e7o81BA2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00181	ECOD (1.6)
QA [auth BA]	PF03947	e7o81BA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF03947	ECOD (1.6)
RA [auth BB]	PF00297	e7o81BB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF00297	ECOD (1.6)
SA [auth BC]	PF00573	e7o81BC2	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: PF00573	ECOD (1.6)
SA [auth BC]	PF14374	e7o81BC1	A: extended segments	X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	T: C-terminal helical region in 60S ribosomal protein L4 (L4p)	F: PF14374	ECOD (1.6)
TA [auth BD]	PF14204,PF17144	e7o81BD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF14204,PF17144	ECOD (1.6)
UA [auth BE]	PF01159,PF03868	e7o81BE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01159,PF03868	ECOD (1.6)
VA [auth BF]	PF00327,PF08079	e7o81BF1	A: a+b two layers	X: Ribosomal protein L30p/L7e (From Topology)	H: Ribosomal protein L30p/L7e (From Topology)	T: Ribosomal protein L30p/L7e	F: PF00327,PF08079	ECOD (1.6)
WA [auth BG]	PF01248	e7o81BG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
E [auth AD]	PF04758	e7o81AD1	A: extended segments	X: 40S ribosomal protein S30 (S30e) (From Topology)	H: 40S ribosomal protein S30 (S30e) (From Topology)	T: 40S ribosomal protein S30 (S30e)	F: PF04758	ECOD (1.6)
XA [auth BH]	PF00347	e7o81BH1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: PF00347	ECOD (1.6)
YA [auth BI]	PF00252	e7o81BI1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: PF00252	ECOD (1.6)
ZA [auth BJ]	PF00281,PF00673	e7o81BJ1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: PF00281,PF00673	ECOD (1.6)
BB [auth BL]	PF01294	e7o81BL1	A: extended segments	X: RPL13 (From Topology)	H: RPL13 (From Topology)	T: RPL13	F: PF01294	ECOD (1.6)
CB [auth BM]	PF00467,PF01929	e7o81BM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01929	ECOD (1.6)
DB [auth BN]	PF00827	e7o81BN1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00827	ECOD (1.6)
EB [auth BO]	PF00572	e7o81BO1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: PF00572	ECOD (1.6)
FB [auth BP]	PF00237	e7o81BP1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: PF00237	ECOD (1.6)
GB [auth BQ]	PF17135	e7o81BQ1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF17135	ECOD (1.6)
F [auth AE]	PF01283	e7o81AE1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01283	ECOD (1.6)
HB [auth BR]	PF01280	e7o81BR2	A: alpha arrays	X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) N-terminal domain	F: PF01280	ECOD (1.6)
HB [auth BR]	PF01280	e7o81BR1	A: alpha bundles	X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) C-terminal domain	F: PF01280	ECOD (1.6)
IB [auth BS]	F_UNCLASSIFIED	e7o81BS1	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: F_UNCLASSIFIED	ECOD (1.6)
IB [auth BS]	PF01775	e7o81BS2	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: PF01775	ECOD (1.6)
JB [auth BT]	PF01157	e7o81BT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01157	ECOD (1.6)
KB [auth BU]	PF01776	e7o81BU1	A: a+b two layers	X: Ribosomal protein L22e (From Topology)	H: Ribosomal protein L22e (From Topology)	T: Ribosomal protein L22e	F: PF01776	ECOD (1.6)
LB [auth BV]	PF00238	e7o81BV1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF00238	ECOD (1.6)
MB [auth BW]	PF01246	e7o81BW1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01246	ECOD (1.6)
NB [auth BX]	PF00276,PF03939	e7o81BX1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00276,PF03939	ECOD (1.6)
OB [auth BY]	PF16906	e7o81BY1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF16906	ECOD (1.6)
PB [auth BZ]	PF00467,PF01777	e7o81BZ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01777	ECOD (1.6)
QB [auth Ba]	PF00828	e7o81Ba1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF00828	ECOD (1.6)
G [auth AF]	PF00400	e7o81AF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
RB [auth Bb]	PF01779	e7o81Bb1	A: extended segments	X: RPL29 (From Topology)	H: RPL29 (From Topology)	T: RPL29	F: PF01779	ECOD (1.6)
SB [auth Bc]	PF01248	e7o81Bc1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
TB [auth Bd]	PF01198	e7o81Bd1	A: a+b two layers	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain (From Topology)	T: Ribosomal protein L31e/gp120 outer domain	F: PF01198	ECOD (1.6)
UB [auth Be]	PF01655	e7o81Be1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L32e (From Topology)	T: Ribosomal protein L32e	F: PF01655	ECOD (1.6)
VB [auth Bf]	PF01247	e7o81Bf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF01247	ECOD (1.6)
WB [auth Bg]	PF01199	e7o81Bg1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: RPL34 (From Topology)	T: RPL34	F: PF01199	ECOD (1.6)
XB [auth Bh]	PF00831	e7o81Bh1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: PF00831	ECOD (1.6)
YB [auth Bi]	PF01158	e7o81Bi1	A: alpha arrays	X: 60S ribosomal protein rpL36 (L36e) (From Topology)	H: 60S ribosomal protein rpL36 (L36e) (From Topology)	T: 60S ribosomal protein rpL36 (L36e)	F: PF01158	ECOD (1.6)
ZB [auth Bj]	PF01907	e7o81Bj1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01907	ECOD (1.6)
AC [auth Bk]	PF01781	e7o81Bk1	A: a+b two layers	X: SRP9/14-like	H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)	T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related	F: PF01781	ECOD (1.6)
H [auth AG]	PF00253	e7o81AG1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF00253	ECOD (1.6)
BC [auth Bl]	PF00832	e7o81Bl1	A: extended segments	X: Ribosomal protein L39e (From Topology)	H: Ribosomal protein L39e (From Topology)	T: Ribosomal protein L39e	F: PF00832	ECOD (1.6)
CC [auth Bm]	PF01020	e7o81Bm1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01020	ECOD (1.6)
DC [auth Bo]	PF00935	e7o81Bo1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00935	ECOD (1.6)
EC [auth Bp]	PF01780	e7o81Bp1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01780	ECOD (1.6)
FC [auth Br]	PF01778	e7o81Br1	A: a+b two layers	X: RPL28 (From Topology)	H: RPL28 (From Topology)	T: RPL28	F: PF01778	ECOD (1.6)
GC [auth Bs]	PF00466	e7o81Bs1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein L10-like (From Topology)	T: Ribosomal protein L10-like	F: PF00466	ECOD (1.6)
GC [auth Bs]	PF17777	e7o81Bs2	A: a+b two layers	X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)	H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)	T: Insertion domain in 60S ribosomal protein rpP0 (L10P)	F: PF17777	ECOD (1.6)
HC [auth Bt]	PF00298	e7o81Bt1	A: alpha arrays	X: HTH	H: HTH	T: Ribosomal protein L11, C-terminal domain	F: PF00298	ECOD (1.6)
HC [auth Bt]	PF03946	e7o81Bt2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: Ribosomal protein L11/L12e N-terminal domain (From Topology)	T: Ribosomal protein L11/L12e N-terminal domain	F: PF03946	ECOD (1.6)
IC [auth Bv]	PF00687	e7o81Bv1	A: a+b two layers	X: a+b domain in Ribosomal protein L1 (From Topology)	H: a+b domain in Ribosomal protein L1 (From Topology)	T: a+b domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)
IC [auth Bv]	PF00687	e7o81Bv2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Rossmann-like domain in Ribosomal protein L1 (From Topology)	T: Rossmann-like domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
M [auth AZ]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
M [auth AZ]	PF16122	40S ribosomal protein SA C-terminus (40S_SA_C)	40S ribosomal protein SA C-terminus	-	Family
N [auth Aa]	PF01015	Ribosomal S3Ae family (Ribosomal_S3Ae)	Ribosomal S3Ae family	-	Family
P [auth Ac]	PF07650	KH domain (KH_2)	KH domain	-	Domain
P [auth Ac]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
R [auth Ae]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
S [auth Af]	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family
B [auth AA]	PF01667	Ribosomal protein S27 (Ribosomal_S27e)	Ribosomal protein S27	-	Family
T [auth Ag]	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
U [auth Ah]	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family
V [auth Ai]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
V [auth Ai]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
W [auth Aj]	PF03501	Plectin/S10 domain (S10_plectin)	Plectin/S10 domain	This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.	Domain
X [auth Ak]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
X [auth Ak]	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
Y [auth Al]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
Z [auth Am]	PF08069	Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)	Ribosomal S13/S15 N-terminal domain	This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].	Domain
Z [auth Am]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
AA [auth An]	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
BA [auth Ao]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19	-	Domain
CA [auth Ap]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
C [auth AB]	PF01200	Ribosomal protein S28e (Ribosomal_S28e)	Ribosomal protein S28e	-	Family
DA [auth Aq]	PF00833	Ribosomal S17 (Ribosomal_S17e)	Ribosomal S17	-	Family
EA [auth Ar]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
GA [auth At]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
IA [auth Av]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
JA [auth Aw]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family
KA [auth Ax]	PF01282	Ribosomal protein S24e (Ribosomal_S24e)	Ribosomal protein S24e	-	Family
LA [auth Ay]	PF03297	S25 ribosomal protein (Ribosomal_S25)	S25 ribosomal protein	-	Family
MA [auth Az]	PF05162	Ribosomal protein L41 (Ribosomal_L41)	Ribosomal protein L41	-	Family
D [auth AC]	PF01599	Ribosomal protein S27a (Ribosomal_S27)	Ribosomal protein S27a	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].	Domain
RA [auth BB]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
SA [auth BC]	PF14374	60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)	60S ribosomal protein L4 C-terminal domain	This family is found at the very C-terminal of 60 ribosomal L4 proteins.	Domain
SA [auth BC]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
TA [auth BD]	PF17144	Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)	Ribosomal large subunit proteins 60S L5, and 50S L18	-	Family
TA [auth BD]	PF14204	Ribosomal L18 C-terminal region (Ribosomal_L18_c)	Ribosomal L18 C-terminal region	This domain is the C-terminal end of ribosomal L18/L5 proteins.	Domain
UA [auth BE]	PF03868	Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)	Ribosomal protein L6, N-terminal domain	-	Domain
UA [auth BE]	PF01159	Ribosomal protein L6e (Ribosomal_L6e)	Ribosomal protein L6e	-	Family
E [auth AD]	PF04758	Ribosomal protein S30 (Ribosomal_S30)	Ribosomal protein S30	-	Family
XA [auth BH]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
YA [auth BI]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
ZA [auth BJ]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
ZA [auth BJ]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
AB [auth BK]	PF09401	Coronavirus RNA synthesis protein NSP10 (CoV_NSP10)	Coronavirus RNA synthesis protein NSP10	-	Family
CB [auth BM]	PF01929	Ribosomal protein L14 (Ribosomal_L14e)	Ribosomal protein L14	-	Family
DB [auth BN]	PF00827	Ribosomal L15 (Ribosomal_L15e)	Ribosomal L15	-	Family
FB [auth BP]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
HB [auth BR]	PF01280	Ribosomal protein L19e (Ribosomal_L19e)	Ribosomal protein L19e	-	Family
JB [auth BT]	PF01157	Ribosomal protein L21e (Ribosomal_L21e)	Ribosomal protein L21e	-	Family
LB [auth BV]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
MB [auth BW]	PF01246	Ribosomal protein L24e (Ribosomal_L24e)	Ribosomal protein L24e	-	Domain
NB [auth BX]	PF03939	Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)	Ribosomal protein L23, N-terminal domain	-	Family
NB [auth BX]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
OB [auth BY]	PF16906	Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)	Ribosomal proteins L26 eukaryotic, L24P archaeal	-	Family
OB [auth BY]	PF00467	KOW motif (KOW)	KOW motif	-	Family
PB [auth BZ]	PF01777	Ribosomal L27e protein family (Ribosomal_L27e)	Ribosomal L27e protein family	-	Family
PB [auth BZ]	PF00467	KOW motif (KOW)	KOW motif	-	Family
QB [auth Ba]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
G [auth AF]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
RB [auth Bb]	PF01779	Ribosomal L29e protein family (Ribosomal_L29e)	Ribosomal L29e protein family	-	Family
SB [auth Bc]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
TB [auth Bd]	PF01198	Ribosomal protein L31e (Ribosomal_L31e)	Ribosomal protein L31e	-	Family
UB [auth Be]	PF01655	Ribosomal protein L32 (Ribosomal_L32e)	Ribosomal protein L32	-	Family
VB [auth Bf]	PF01247	Ribosomal protein L35Ae (Ribosomal_L35Ae)	Ribosomal protein L35Ae	-	Domain
WB [auth Bg]	PF01199	Ribosomal protein L34e (Ribosomal_L34e)	Ribosomal protein L34e	-	Family
XB [auth Bh]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
YB [auth Bi]	PF01158	Ribosomal protein L36e (Ribosomal_L36e)	Ribosomal protein L36e	-	Family
ZB [auth Bj]	PF01907	Ribosomal protein L37e (Ribosomal_L37e)	Ribosomal protein L37e	-	Family
AC [auth Bk]	PF01781	Ribosomal L38e protein family (Ribosomal_L38e)	Ribosomal L38e protein family	-	Family
H [auth AG]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
BC [auth Bl]	PF00832	Ribosomal L39 protein (Ribosomal_L39)	Ribosomal L39 protein	-	Family
DC [auth Bo]	PF00935	Ribosomal protein L44 (Ribosomal_L44)	Ribosomal protein L44	-	Family
EC [auth Bp]	PF01780	Ribosomal L37ae protein family (Ribosomal_L37ae)	Ribosomal L37ae protein family	-	Family
GC [auth Bs]	PF17777	Insertion domain in 60S ribosomal protein L10P (RL10P_insert)	Insertion domain in 60S ribosomal protein L10P	This domain is found in prokaryotic and archaeal ribosomal L10 protein [1].	Domain
GC [auth Bs]	PF00466	Ribosomal protein L10 (Ribosomal_L10)	Ribosomal protein L10	-	Family
HC [auth Bt]	PF03946	Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)	Ribosomal protein L11, N-terminal domain	The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.	Domain
HC [auth Bt]	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain	-	Domain
IC [auth Bv]	PF00687	Ribosomal protein L1p/L10e family (Ribosomal_L1)	Ribosomal protein L1p/L10e family	This family includes prokaryotic L1 and eukaryotic L10.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A2]	18S rRNA	-	-	-
J [auth AJ]	A-site Met-tRNA(Met)	-	-	-
K [auth AT]	P-site tRNA(Pro)	-	-	-
L [auth AU]	EDF1	-	-	-
M [auth AZ]	40S ribosomal protein SA	-	-	-
N [auth Aa]	40S ribosomal protein S3a	-	-	-
O [auth Ab]	Ribosomal protein uS5	-	-	-
P [auth Ac]	40S ribosomal protein S3	-	-	-
Q [auth Ad]	Ribosomal protein eS4	-	-	-
R [auth Ae]	Ribosomal protein S5	-	-	-
S [auth Af]	40S ribosomal protein S6	-	-	-
B [auth AA]	40S ribosomal protein S27	-	-	-
T [auth Ag]	40S ribosomal protein S7	-	-	-
U [auth Ah]	40S ribosomal protein S8	-	-	-
V [auth Ai]	Ribosomal protein S9 (Predicted)	-	-	-
W [auth Aj]	Ribosomal protein eS10	-	-	-
X [auth Ak]	40S ribosomal protein S11	-	-	-
Y [auth Al]	40S ribosomal protein S12	-	-	-
Z [auth Am]	uS15	-	-	-
AA [auth An]	40S ribosomal protein uS11	-	-	-
BA [auth Ao]	40S ribosomal protein uS19	-	-	-
CA [auth Ap]	uS9	-	-	-
C [auth AB]	Ribosomal protein S28	-	-	-
DA [auth Aq]	40S ribosomal protein eS17	-	-	-
EA [auth Ar]	40S ribosomal protein S18	-	-	-
FA [auth As]	Ribosomal protein eS19	-	-	-
GA [auth At]	40S ribosomal protein uS10	-	-	-
HA [auth Au]	Ribosomal protein eS21	-	-	-
IA [auth Av]	Ribosomal protein S15a	-	-	-
JA [auth Aw]	40S ribosomal protein S23	-	-	-
KA [auth Ax]	40S ribosomal protein S24	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	ribosomal subunit intracellular organelle protein-containing complex intracellular anatomical structure organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
LA [auth Ay]	40S ribosomal protein S25	-	-	-
MA [auth Az]	60s ribosomal protein l41	-	-	-
D [auth AC]	Ribosomal protein S27a	-	-	-
NA [auth B5]	28S rRNA	-	-	-
OA [auth B7]	5S rRNA	-	-	-
PA [auth B8]	5.8S rRNA	-	-	-
QA [auth BA]	Ribosomal protein uL2	-	-	-
RA [auth BB]	Ribosomal protein L3	-	-	-
SA [auth BC]	60S ribosomal protein L4	-	-	-
TA [auth BD]	Ribosomal_L18_c domain-containing protein	-	-	-
UA [auth BE]	60S ribosomal protein L6	-	-	-
VA [auth BF]	Ribosomal Protein uL30	-	-	-
WA [auth BG]	Ribosomal protein eL8	-	-	-
E [auth AD]	40S ribosomal protein S30	-	-	-
XA [auth BH]	60S ribosomal protein L9	-	-	-
YA [auth BI]	60S ribosomal protein L10	-	-	-
ZA [auth BJ]	Ribosomal protein L11	-	-	-
AB [auth BK]	Replicase polyprotein 1ab	protein guanylyltransferase activity guanylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups 3'-5'-RNA exonuclease activity catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity protein guanylyltransferase activity guanylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups 3'-5'-RNA exonuclease activity catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exonuclease activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA methyltransferase activity transferase activity, transferring one-carbon groups S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity methyltransferase activity mRNA methyltransferase activity lipid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters endonuclease activity RNA endonuclease activity, producing 3'-phosphomonoesters RNA endonuclease activity peptidase activity omega peptidase activity catalytic activity, acting on a protein cation binding transition metal ion binding copper ion binding metal ion binding O-methyltransferase activity mRNA (nucleoside-2'-O-)-methyltransferase activity 5'-3' RNA polymerase activity RNA polymerase activity RNA-dependent RNA polymerase activity mRNA guanylyltransferase activity RNA guanylyltransferase activity cysteine-type peptidase activity ubiquitin-like protein peptidase activity ISG15-specific peptidase activity cysteine-type endopeptidase activity endopeptidase activity lyase activity RNA binding nucleic acid binding single-stranded RNA binding cysteine-type deubiquitinase activity deubiquitinase activity G-quadruplex RNA binding 5'-3' RNA helicase activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA zinc ion binding	cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process viral RNA genome replication organic cyclic compound biosynthetic process viral process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host ISG15-protein conjugation response to host defenses biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated perturbation of host immune response response to defenses of other organism symbiont-mediated perturbation of host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response modulation by symbiont of host process response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response response to host response to external biotic stimulus modulation of process of another organism viral gene expression viral protein processing symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated perturbation of host ubiquitin-like protein modification gene expression DNA-templated transcription catabolic process regulation of cellular process autophagy positive regulation of biological process modulation by virus of host process positive regulation of cellular metabolic process regulation of autophagy cellular catabolic process positive regulation of metabolic process induction by virus of host autophagy process utilizing autophagic mechanism positive regulation of cellular process modulation by virus of host cellular process positive regulation of autophagy regulation of biological process modulation by virus of host autophagy biological regulation regulation of cellular metabolic process regulation of catabolic process symbiont-mediated perturbation of host autophagy positive regulation of catabolic process regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of metabolic process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity symbiont-mediated perturbation of host translation symbiont-mediated suppression of host gene expression symbiont-mediated degradation of host mRNA symbiont-mediated suppression of host translation symbiont-mediated perturbation of host gene expression symbiont-mediated suppression of host toll-like receptor signaling pathway organonitrogen compound metabolic process proteolysis protein metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell part host intracellular region cellular anatomical entity host cell cytoplasm part host intracellular organelle cytoplasmic viral factory double membrane vesicle viral factory membrane host cell membrane host cell cytoplasmic vesicle membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell part host intracellular region cellular anatomical entity host cell cytoplasm part host intracellular organelle cytoplasmic viral factory double membrane vesicle viral factory membrane host cell membrane host cell cytoplasmic vesicle membrane host cell cytoplasmic vesicle viral factory double membrane vesicle viral factory outer membrane double membrane vesicle viral factory host cell perinuclear region of cytoplasm host cell endosome host cell nucleus membrane host cell endoplasmic reticulum host cell endomembrane system host cell endoplasmic reticulum membrane host cell Golgi apparatus
BB [auth BL]	Ribosomal protein eL13	-	-	-
CB [auth BM]	Ribosomal protein L14	-	-	-
DB [auth BN]	Ribosomal protein L15	-	-	-
EB [auth BO]	Ribosomal protein L13a	-	-	-
FB [auth BP]	uL22	-	-	-
GB [auth BQ]	Ribosomal protein L18	-	-	-
F [auth AE]	Ribosomal protein eS26	-	-	-
HB [auth BR]	60S ribosomal protein L19	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
IB [auth BS]	Ribosomal protein L18a	-	-	-
JB [auth BT]	eL21	-	-	-
KB [auth BU]	Ribosomal protein eL22	-	-	-
LB [auth BV]	Ribosomal protein L23	-	-	-
MB [auth BW]	eL24	-	-	-
NB [auth BX]	uL23	-	-	-
OB [auth BY]	Ribosomal protein L26	-	-	-
PB [auth BZ]	60S ribosomal protein L27	-	-	-
QB [auth Ba]	60S ribosomal protein L27a	-	-	-
G [auth AF]	RACK1	-	-	-
RB [auth Bb]	60S ribosomal protein L29	-	-	-
SB [auth Bc]	eL30	-	-	-
TB [auth Bd]	eL31	-	-	-
UB [auth Be]	eL32	-	-	-
VB [auth Bf]	eL33	-	-	-
WB [auth Bg]	60S ribosomal protein L34	-	-	-
XB [auth Bh]	uL29	-	-	-
YB [auth Bi]	60S ribosomal protein L36	-	-	-
ZB [auth Bj]	Ribosomal protein L37	-	-	-
AC [auth Bk]	eL38	-	-	-
H [auth AG]	uS14	-	-	-
BC [auth Bl]	eL39	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
CC [auth Bm]	60S ribosomal protein L40	-	-	-
DC [auth Bo]	eL42	-	-	-
EC [auth Bp]	eL43	-	-	-
FC [auth Br]	Ribosomal protein eL28	-	-	-
GC [auth Bs]	60S acidic ribosomal protein P0	-	-	-
HC [auth Bt]	Ribosomal protein L12	-	-	-
IC [auth Bv]	Ribosomal protein uL1	-	-	-
I [auth AH]	mRNA containing SARS-CoV-2 sequence	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
W [auth Aj]	IPR037447	Small ribosomal subunit protein eS10	Family
W [auth Aj]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
W [auth Aj]	IPR005326	Plectin/eS10, N-terminal	Domain
KA [auth Ax]	IPR001976	Small ribosomal subunit protein eS24	Family
KA [auth Ax]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
KA [auth Ax]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
AB [auth BK]	IPR022733	DPUP/SUD, C-terminal, betacoronavirus	Domain
AB [auth BK]	IPR042515	Non-structural protein NSP15, N-terminal domain superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR043174	Non-structural protein NSP15, middle domain superfamily	Homologous Superfamily
AB [auth BK]	IPR044315	Nonstructural protein 14, betacoronavirus	Domain
AB [auth BK]	IPR038123	Non-structural protein NSP4, C-terminal superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR042570	Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirus	Homologous Superfamily
AB [auth BK]	IPR043178	Papain-like protease, thumb domain superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR046441	RNA-dependent RNA polymerase, coronavirus	Domain
AB [auth BK]	IPR044863	Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domain	Domain
AB [auth BK]	IPR044343	Nonstructural protein 13, 1B domain, coronavirus	Domain
AB [auth BK]	IPR038166	Polyprotein cleavage domain PL2pro superfamily, betacoronavirus	Homologous Superfamily
AB [auth BK]	IPR037227	Endoribonuclease EndoU-like	Homologous Superfamily
AB [auth BK]	IPR027352	Nonstructural protein 13, zinc-binding domain, coronavirus-like	Domain
AB [auth BK]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AB [auth BK]	IPR013016	Peptidase C16, coronavirus	Domain
AB [auth BK]	IPR009466	Non-structural protein 14, coronavirus	Domain
AB [auth BK]	IPR044357	NSP3, first ubiquitin-like (Ubl) domain, coronavirus	Domain
AB [auth BK]	IPR046436	Nidovirus 3'-5' exoribonuclease domain	Domain
AB [auth BK]	IPR047570	NSP12, interface domain, coronavirus	Domain
AB [auth BK]	IPR018995	RNA synthesis protein NSP10, coronavirus	Domain
AB [auth BK]	IPR043615	Nonstructural protein 2, N-terminal domain, coronavirus	Domain
AB [auth BK]	IPR043177	Papain-like protease, N-terminal domain superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR043606	Coronavirus replicase NSP15, N-terminal oligomerization	Domain
AB [auth BK]	IPR044330	Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirus	Domain
AB [auth BK]	IPR041679	DNA2/NAM7 helicase-like, C-terminal	Domain
AB [auth BK]	IPR024375	Non-structural protein NSP3, SUD-M domain, betacoronavirus	Domain
AB [auth BK]	IPR014828	Non-structural protein NSP7, coronavirus	Domain
AB [auth BK]	IPR043503	Papain-like viral protease, palm and finger domains, coronavirus	Homologous Superfamily
AB [auth BK]	IPR014829	Non-structural protein NSP8, coronavirus	Domain
AB [auth BK]	IPR036499	Non-structural protein NSP9 superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
AB [auth BK]	IPR044389	Non-structural protein 2, SARS-CoV-like	Domain
AB [auth BK]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
AB [auth BK]	IPR008740	Peptidase C30, coronavirus	Domain
AB [auth BK]	IPR036333	RNA synthesis protein NSP10 superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR047573	Non-structural protein 2, middle domain, coronavirus	Domain
AB [auth BK]	IPR043472	Macro domain-like	Homologous Superfamily
AB [auth BK]	IPR043609	NendoU domain, nidovirus	Domain
AB [auth BK]	IPR032592	Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirus	Domain
AB [auth BK]	IPR043613	Non-structural protein 2, C-terminal domain, coronavirus	Domain
AB [auth BK]	IPR038083	Non-structural protein NSP3A domain-like superfamily	Homologous Superfamily
AB [auth BK]	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
AB [auth BK]	IPR044351	RNA-dependent RNA polymerase, SARS-CoV-like	Domain
AB [auth BK]	IPR024358	Non-structural protein NSP3, N-terminal, betacoronavirus	Domain
AB [auth BK]	IPR048673	Nonstructural protein 13, stalk domain, coronavirus	Domain
AB [auth BK]	IPR046435	NSP14, guanine-N7-methyltransferase domain, coronavirus	Domain
AB [auth BK]	IPR009469	RNA-dependent RNA polymerase, N-terminal, coronavirus	Domain
AB [auth BK]	IPR043611	Coronavirus replicase NSP3, C-terminal	Domain
AB [auth BK]	IPR044864	Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirus	Domain
AB [auth BK]	IPR047566	Coronavirus replicase NSP3, Y domain	Domain
AB [auth BK]	IPR048672	Nonstructural protein 13, zinc-binding domain, coronavirus	Domain
AB [auth BK]	IPR043612	Non-structural protein NSP4, N-terminal, coronavirus	Domain
AB [auth BK]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
AB [auth BK]	IPR043608	Nonstructural protein 15, middle domain, coronavirus	Domain
AB [auth BK]	IPR044353	NSP3, second ubiquitin-like (Ubl) domain, coronavirus	Domain
AB [auth BK]	IPR037204	Non-structural protein NSP7 superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR046443	NSP1, globular domain, alpha/betacoronavirus	Domain
AB [auth BK]	IPR043610	Non-structural protein 6, coronavirus	Domain
AB [auth BK]	IPR027351	(+) RNA virus helicase core domain	Domain
AB [auth BK]	IPR044322	Nonstructural protein 15, middle domain, alpha/betacoronavirus	Domain
AB [auth BK]	IPR009461	Non-structural protein NSP16, coronavirus-like	Domain
AB [auth BK]	IPR043477	Peptidase C30, domain 3, coronavirus	Homologous Superfamily
AB [auth BK]	IPR043478	Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirus	Homologous Superfamily
AB [auth BK]	IPR038400	Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirus	Homologous Superfamily
AB [auth BK]	IPR046442	NSP1, C-terminal domain, betacoronavirus	Domain
AB [auth BK]	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
AB [auth BK]	IPR044401	NSP15, NendoU domain, coronavirus	Domain
AB [auth BK]	IPR014822	Non-structural protein NSP9, coronavirus	Domain
AB [auth BK]	IPR038030	NSP1 globular domain superfamily, betacoronavirus	Homologous Superfamily
AB [auth BK]	IPR021590	NSP1, globular domain, betacoronavirus	Domain
AB [auth BK]	IPR044367	Non-structural protein 6, betacoronavirus	Domain
AB [auth BK]	IPR037230	Non-structural protein NSP8 superfamily, coronavirus	Homologous Superfamily
AB [auth BK]	IPR046440	Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domain	Domain
AB [auth BK]	IPR032505	Non-structural protein NSP4, C-terminal, coronavirus	Domain
AB [auth BK]	IPR046438	Nidovirus 2-O-methyltransferase	Domain
AB [auth BK]	IPR002589	Macro domain	Domain
AB [auth BK]	IPR047567	Non-structural protein NSP3, group 2-specific marker domain, betacoronavirus	Domain
AB [auth BK]	IPR044371	Non-structural protein 3, X-domain-like	Domain
AB [auth BK]	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
HB [auth BR]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
HB [auth BR]	IPR039547	Large ribosomal subunit protein eL19	Family
HB [auth BR]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
HB [auth BR]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
HB [auth BR]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain
HB [auth BR]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
BC [auth Bl]	IPR023626	Large ribosomal subunit protein eL39 domain superfamily	Homologous Superfamily
BC [auth Bl]	IPR000077	Large ribosomal subunit protein eL39	Family
BC [auth Bl]	IPR020083	Large ribosomal subunit protein eL39, conserved site	Conserved Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth A2]	4AC
A [auth A2]	6MZ	Parent Component: A
A [auth A2]	A2M	Parent Component: A
A [auth A2]	B8N
A [auth A2]	G7M	Parent Component: G
A [auth A2]	MA6	Parent Component: A
A [auth A2]	OMC	Parent Component: C
A [auth A2]	OMG	Parent Component: G
A [auth A2]	OMU	Parent Component: U
A [auth A2]	PSU	Parent Component: U
J [auth AJ]	5MU	Parent Component: U
J [auth AJ]	PSU	Parent Component: U
K [auth AT]	5MU	Parent Component: U
K [auth AT]	PSU	Parent Component: U
M [auth AZ]	SAC	Parent Component: SER
EA [auth Ar]	SAC	Parent Component: SER
FA [auth As]	NMM	Parent Component: ARG
HA [auth Au]	AME	Parent Component: MET
JA [auth Aw]	HY3	Parent Component: PRO RESID: AA0029 PSI-MOD : 3-hydroxy-L-proline MOD:00038
NA [auth B5]	1MA	Parent Component: A RESID: AA0029
NA [auth B5]	5MC	Parent Component: C RESID: AA0029
NA [auth B5]	6MZ	Parent Component: A RESID: AA0029
NA [auth B5]	A2M	Parent Component: A RESID: AA0029
NA [auth B5]	OMC	Parent Component: C RESID: AA0029
NA [auth B5]	OMG	Parent Component: G RESID: AA0029
NA [auth B5]	OMU	Parent Component: U RESID: AA0029
NA [auth B5]	PSU	Parent Component: U RESID: AA0029
NA [auth B5]	UR3	Parent Component: U RESID: AA0029
NA [auth B5]	UY1	RESID: AA0029
OA [auth B7]	GTP	Parent Component: G RESID: AA0029
PA [auth B8]	OMG	Parent Component: G RESID: AA0029
PA [auth B8]	PSU	Parent Component: U RESID: AA0029
QA [auth BA]	V5N	Parent Component: HIS RESID: AA0029
RA [auth BB]	HIC	Parent Component: HIS RESID: AA0029 , AA0317 PSI-MOD : 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322
SA [auth BC]	AYA	Parent Component: ALA RESID: AA0029 , AA0317
TA [auth BD]	AAC	RESID: AA0029 , AA0317
QB [auth Ba]	V5N	Parent Component: HIS RESID: AA0029 , AA0317
RB [auth Bb]	MLZ	Parent Component: LYS RESID: AA0029 , AA0317 , AA0076 PSI-MOD : 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085
CC [auth Bm]	M3L	Parent Component: LYS RESID: AA0029 , AA0317 , AA0076 , AA0074 PSI-MOD : 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083
DC [auth Bo]	MLZ	Parent Component: LYS RESID: AA0029 , AA0317 , AA0076 , AA0074 , AA0076 PSI-MOD : 3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , N6-methyl-L-lysine MOD:00085
FC [auth Br]	SAC	Parent Component: SER RESID: AA0029 , AA0317 , AA0076 , AA0074 , AA0076