7O78 | pdb_00007o78

Structure of the PL6 family chondroitinase B from Pseudopedobacter saltans, Pedsa3807

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d7o78b1	All beta proteins	Single-stranded right-handed beta-helix	Pectin lyase-like	Chondroitinase B	automated matches	Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ],	SCOPe (2.08)
B	d7o78b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ],	SCOPe (2.08)
A	d7o78a_	All beta proteins	Single-stranded right-handed beta-helix	Pectin lyase-like	Chondroitinase B	automated matches	Pedobacter saltans (Pseudopedobacter saltans DSM 12145 ) [TaxId: 762903 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Pectin lyase-like	8103921	3001746	SCOP2B (2022-06-29)
A	SCOP2 Family	Chondroitinase B	8103920	4002809	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pectin lyase-like	8103921	3001746	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Hormone_recep	e7o78B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Hormone_recep	ECOD (v294.1)
A	zf-C3HC4	e7o78A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14592	Chondroitinase B (Chondroitinas_B)	Chondroitinase B	-	Repeat

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR012334	Pectin lyase fold	Homologous Superfamily
A, B	IPR039513	PL-6 family	Family
A, B	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.