7NZ3
Cryo-EM structure of apposed MukBEF-MatP monomers on DNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth E1] | PF04288 | e7nz3E12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF04288 | ECOD (1.6) |
I [auth E1] | PF04288 | e7nz3E11 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: PF04288 | ECOD (1.6) |
J [auth E2] | PF04288 | e7nz3E22 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF04288 | ECOD (1.6) |
J [auth E2] | PF04288 | e7nz3E21 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: PF04288 | ECOD (1.6) |
K [auth F1] | PF04288 | e7nz3F12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF04288 | ECOD (1.6) |
K [auth F1] | PF04288 | e7nz3F11 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: PF04288 | ECOD (1.6) |
L [auth F2] | PF04288 | e7nz3F21 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF04288 | ECOD (1.6) |
L [auth F2] | PF04288 | e7nz3F22 | A: a+b two layers | X: Chromosome partition protein mukE N-terminal domain (From Topology) | H: Chromosome partition protein mukE N-terminal domain (From Topology) | T: Chromosome partition protein mukE N-terminal domain | F: PF04288 | ECOD (1.6) |
M [auth G1] | PF00550 | e7nz3G11 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
N [auth G2] | PF00550 | e7nz3G21 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
O [auth H1] | PF00550 | e7nz3H11 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
P [auth H2] | PF00550 | e7nz3H21 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
Q [auth I1] | PF17414 | e7nz3I12 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF17414 | ECOD (1.6) |
Q [auth I1] | PF06303 | e7nz3I11 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: PF06303 | ECOD (1.6) |
R [auth I2] | PF17414 | e7nz3I22 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF17414 | ECOD (1.6) |
R [auth I2] | PF06303 | e7nz3I21 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: PF06303 | ECOD (1.6) |
S [auth J1] | PF17414 | e7nz3J11 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF17414 | ECOD (1.6) |
S [auth J1] | PF06303 | e7nz3J12 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: PF06303 | ECOD (1.6) |
T [auth J2] | PF17414 | e7nz3J22 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF17414 | ECOD (1.6) |
T [auth J2] | PF06303 | e7nz3J21 | A: alpha arrays | X: Macrodomain Ter protein MatP (From Topology) | H: Macrodomain Ter protein MatP (From Topology) | T: Macrodomain Ter protein MatP | F: PF06303 | ECOD (1.6) |
E [auth C1] | PF17193 | e7nz3C12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF17193 | ECOD (1.6) |
E [auth C1] | PF17192,PF17193 | e7nz3C11 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: PF17192,PF17193 | ECOD (1.6) |
F [auth C2] | PF17193 | e7nz3C22 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF17193 | ECOD (1.6) |
F [auth C2] | PF17192,PF17193 | e7nz3C21 | A: alpha bundles | X: STAT-like | H: MukF C-terminal domain-like (From Topology) | T: MukF C-terminal domain-like | F: PF17192,PF17193 | ECOD (1.6) |
G [auth D1] | PF03882 | e7nz3D11 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03882 | ECOD (1.6) |
H [auth D2] | PF03882 | e7nz3D21 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03882 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
I [auth E1], J [auth E2], K [auth F1], L [auth F2] | PF04288 | MukE-like family (MukE) | MukE-like family | - | Family |
Q [auth I1], R [auth I2], S [auth J1], T [auth J2] | PF17414 | MatP C-terminal ribbon-helix-helix domain (MatP_C) | MatP C-terminal ribbon-helix-helix domain | This family, many of whose members are YcbG, organises the macrodomain Ter of the chromosome of bacteria such as E coli. In these bacteria, insulated macrodomains influence the segregation of sister chromatids and the mobility of chromosomal DNA. Org ... | Domain |
Q [auth I1], R [auth I2], S [auth J1], T [auth J2] | PF06303 | MatP N-terminal domain (MatP) | MatP N-terminal domain | This family, many of whose members are YcbG, organises the macrodomain Ter of the chromosome of bacteria such as E coli. In these bacteria, insulated macrodomains influence the segregation of sister chromatids and the mobility of chromosomal DNA. Org ... | Domain |
A [auth A1], B [auth A2], C [auth B1], D [auth B2] | PF13558 | SbcC/RAD50-like, Walker B motif (SbcC_Walker_B) | SbcC/RAD50-like, Walker B motif | This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is sepa ... | Domain |
A [auth A1], B [auth A2], C [auth B1], D [auth B2] | PF16330 | MukB hinge domain (MukB_hinge) | MukB hinge domain | The hinge domain of chromosome partition protein MukB is responsible for dimerisation and is also involved in protein-DNA interactions and conformational flexibility [1]. | Domain |
A [auth A1], B [auth A2], C [auth B1], D [auth B2] | PF04310 | MukB N-terminal (MukB) | MukB N-terminal | This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consist ... | Domain |
E [auth C1], F [auth C2], G [auth D1], H [auth D2] | PF17193 | MukF C-terminal domain (MukF_C) | MukF C-terminal domain | This presumed domain is found at the C-terminus of the MukF protein. | Domain |
E [auth C1], F [auth C2], G [auth D1], H [auth D2] | PF17192 | MukF middle domain (MukF_M) | MukF middle domain | The kicA and kicB genes are found upstream of mukB. It has been suggested that the kicB gene encodes a killing factor and the kicA gene codes for a protein that suppresses the killing function of the kicB gene product [1]. It was also demonstrated th ... | Domain |