7NV0
Human Pol Kappa holoenzyme with wt PCNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040088 | 3001272 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ta1206-like | 8055761 | 3001431 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family) little finger domain | 8040087 | 3000579 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11798 | e7nv0A4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF11798 | ECOD (1.6) |
A | PF11799 | e7nv0A2 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: PF11799 | ECOD (1.6) |
A | PF00817 | e7nv0A1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00817 | ECOD (1.6) |
A | PF00817 | e7nv0A3 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: PF00817 | ECOD (1.6) |
D | PF00705 | e7nv0D1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
D | PF02747 | e7nv0D2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
B | PF00705 | e7nv0B1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
B | PF02747 | e7nv0B2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
C | PF00705 | e7nv0C1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
C | PF02747 | e7nv0C2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00817 | impB/mucB/samB family (IMS) | impB/mucB/samB family | - | Family | |
PF11799 | impB/mucB/samB family C-terminal domain (IMS_C) | impB/mucB/samB family C-terminal domain | These proteins are involved in UV protection (Swiss). | Domain | |
PF11798 | IMS family HHH motif (IMS_HHH) | IMS family HHH motif | - | Motif | |
PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001126 | UmuC domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR036775 | DNA polymerase, Y-family, little finger domain superfamily | Homologous Superfamily | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR022880 | DNA polymerase IV | Family | |
IPR017961 | DNA polymerase, Y-family, little finger domain | Domain | |
IPR006642 | Rad18, zinc finger UBZ4-type | Domain | |
IPR024728 | DNA polymerase type-Y, HhH motif | Conserved Site | |
IPR046938 | DNA clamp superfamily | Homologous Superfamily | |
IPR022648 | Proliferating cell nuclear antigen, PCNA, N-terminal | Domain | |
IPR000730 | Proliferating cell nuclear antigen, PCNA | Family | |
IPR022649 | Proliferating cell nuclear antigen, PCNA, C-terminal | Domain | |
IPR022659 | Proliferating cell nuclear antigen, PCNA, conserved site | Conserved Site |