7NPS | pdb_00007nps

Structure of the periplasmic assembly from the ESX-5 inner membrane complex, C1 model

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth P1]	Peptidase_S8	e7npsP11	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)
H [auth P2]	Peptidase_S8	e7npsP21	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)
I [auth P3]	Peptidase_S8	e7npsP31	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)
A [auth B1]	T7SS_ESX1_EccB_2nd_1	e7npsB11	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
A [auth B1]	T7SS_ESX1_EccB_1st	e7npsB13	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
A [auth B1]	T7SS_ESX1_EccB_2nd	e7npsB12	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
A [auth B1]	T7SS_ESX1_EccB_3rd	e7npsB14	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
A [auth B1]	T7SS_ESX1_EccB_4th	e7npsB15	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)
B [auth B2]	T7SS_ESX1_EccB_2nd_1	e7npsB24	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
B [auth B2]	T7SS_ESX1_EccB_1st	e7npsB21	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
B [auth B2]	T7SS_ESX1_EccB_2nd	e7npsB22	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
B [auth B2]	T7SS_ESX1_EccB_3rd	e7npsB23	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
B [auth B2]	T7SS_ESX1_EccB_4th	e7npsB25	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)
C [auth B3]	T7SS_ESX1_EccB_2nd_1	e7npsB35	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
C [auth B3]	T7SS_ESX1_EccB_1st	e7npsB32	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
C [auth B3]	T7SS_ESX1_EccB_2nd	e7npsB34	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
C [auth B3]	T7SS_ESX1_EccB_3rd	e7npsB33	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
C [auth B3]	T7SS_ESX1_EccB_4th	e7npsB31	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)
E [auth B5]	T7SS_ESX1_EccB_2nd_1	e7npsB52	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
E [auth B5]	T7SS_ESX1_EccB_1st	e7npsB53	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
E [auth B5]	T7SS_ESX1_EccB_2nd	e7npsB55	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
E [auth B5]	T7SS_ESX1_EccB_3rd	e7npsB51	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
E [auth B5]	T7SS_ESX1_EccB_4th	e7npsB54	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)
F [auth B6]	T7SS_ESX1_EccB_2nd_1	e7npsB63	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
F [auth B6]	T7SS_ESX1_EccB_1st	e7npsB64	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
F [auth B6]	T7SS_ESX1_EccB_2nd	e7npsB62	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
F [auth B6]	T7SS_ESX1_EccB_3rd	e7npsB61	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
F [auth B6]	T7SS_ESX1_EccB_4th	e7npsB65	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)
D [auth B4]	T7SS_ESX1_EccB_2nd_1	e7npsB45	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: T7SS_ESX1_EccB_2nd_1	ECOD (1.6)
D [auth B4]	T7SS_ESX1_EccB_1st	e7npsB44	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_1st	ECOD (1.6)
D [auth B4]	T7SS_ESX1_EccB_2nd	e7npsB42	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_2nd	ECOD (1.6)
D [auth B4]	T7SS_ESX1_EccB_3rd	e7npsB43	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_3rd	ECOD (1.6)
D [auth B4]	T7SS_ESX1_EccB_4th	e7npsB41	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: T7SS_ESX1_EccB_4th	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth P1], H [auth P2], I [auth P3]	PF00082	Subtilase family (Peptidase_S8)	Subtilase family	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7 ...	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth P1], H [auth P2], I [auth P3]	Mycosin-5	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	ESX-5 secretion system ATPase EccB5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	-	cell periphery cellular anatomical structure plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth P1], H [auth P2], I [auth P3]	IPR015500	Peptidase S8, subtilisin-related	Family
G [auth P1], H [auth P2], I [auth P3]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
G [auth P1], H [auth P2], I [auth P3]	IPR023834	Type VII secretion system peptidase S8A, mycosin	Family
G [auth P1], H [auth P2], I [auth P3]	IPR023827	Peptidase S8, subtilisin, Asp-active site	Active Site
G [auth P1], H [auth P2], I [auth P3]	IPR000209	Peptidase S8/S53 domain	Domain
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR044857	Type VII secretion system EccB, repeat 1 domain	Homologous Superfamily
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR007795	Type VII secretion system EccB	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR042485	Type VII secretion system EccB, repeat 3 domain	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5] A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6], G [auth P1], H [auth P2], I [auth P3]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Type VII Secretion Systems	Mycobacterial secretion system ESX-5 inner membrane complex, Composite C1 model