7NPS

Structure of the periplasmic assembly from the ESX-5 inner membrane complex, C1 model

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B1]	PF05108	e7npsB11	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
A [auth B1]	PF05108	e7npsB13	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
B [auth B2]	PF05108	e7npsB24	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
B [auth B2]	PF05108	e7npsB21	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
D [auth B4]	PF05108	e7npsB45	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
D [auth B4]	PF05108	e7npsB44	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
E [auth B5]	PF05108	e7npsB52	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
E [auth B5]	PF05108	e7npsB53	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
C [auth B3]	PF05108	e7npsB35	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
C [auth B3]	PF05108	e7npsB32	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
F [auth B6]	PF05108	e7npsB63	A: a+b two layers	X: ESX-1 secretion system protein eccB1 linker domains (From Topology)	H: ESX-1 secretion system protein eccB1 linker domains (From Topology)	T: ESX-1 secretion system protein eccB1 linker domains	F: PF05108	ECOD (1.6)
F [auth B6]	PF05108	e7npsB64	A: a+b three layers	X: ESX-1 secretion system protein eccB1 modular domains (From Topology)	H: ESX-1 secretion system protein eccB1 modular domains (From Topology)	T: ESX-1 secretion system protein eccB1 modular domains	F: PF05108	ECOD (1.6)
I [auth P3]	PF00082	e7npsP31	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: PF00082	ECOD (1.6)
G [auth P1]	PF00082	e7npsP11	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: PF00082	ECOD (1.6)
H [auth P2]	PF00082	e7npsP21	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: PF00082	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth P1], H [auth P2], I [auth P3]	PF00082	Subtilase family (Peptidase_S8)	Subtilase family	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7 ...	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	ESX-5 secretion system ATPase EccB5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	-	cell periphery plasma membrane membrane cellular anatomical entity external encapsulating structure cell wall peptidoglycan-based cell wall extracellular region
G [auth P1], H [auth P2], I [auth P3]	Mycosin-5	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	peptide hormone processing cellular biosynthetic process signaling receptor ligand precursor processing protein maturation organic substance metabolic process proteolysis organic substance biosynthetic process amide metabolic process protein metabolic process regulation of biological quality organonitrogen compound metabolic process regulation of hormone levels cellular metabolic process biological regulation peptide hormone processing cellular biosynthetic process signaling receptor ligand precursor processing protein maturation organic substance metabolic process proteolysis organic substance biosynthetic process amide metabolic process protein metabolic process regulation of biological quality organonitrogen compound metabolic process regulation of hormone levels cellular metabolic process biological regulation primary metabolic process gene expression macromolecule biosynthetic process hormone metabolic process biosynthetic process protein processing metabolic process cellular process macromolecule metabolic process	cell periphery plasma membrane membrane cellular anatomical entity extracellular region extracellular space cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR044857	Type VII secretion system EccB, repeat 1 domain	Homologous Superfamily
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR007795	Type VII secretion system EccB	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR042485	Type VII secretion system EccB, repeat 3 domain	Homologous Superfamily
G [auth P1], H [auth P2], I [auth P3]	IPR015500	Peptidase S8, subtilisin-related	Family
G [auth P1], H [auth P2], I [auth P3]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
G [auth P1], H [auth P2], I [auth P3]	IPR023834	Type VII secretion system peptidase S8A, mycosin	Family
G [auth P1], H [auth P2], I [auth P3]	IPR023827	Peptidase S8, subtilisin, Asp-active site	Active Site
G [auth P1], H [auth P2], I [auth P3]	IPR000209	Peptidase S8/S53 domain	Domain

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5] A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6], G [auth P1], H [auth P2], I [auth P3]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Type VII Secretion Systems	Mycobacterial secretion system ESX-5 inner membrane complex, Composite C1 model

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.