7NPS | pdb_00007nps

Structure of the periplasmic assembly from the ESX-5 inner membrane complex, C1 model

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth P3]	14-3-3	e7npsP31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
H [auth P2]	14-3-3	e7npsP21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
G [auth P1]	Aldedh	e7npsP11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Aldedh	ECOD (v294.1)
F [auth B6]	14-3-3	e7npsB61	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
E [auth B5]	14-3-3	e7npsB51	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
D [auth B4]	14-3-3	e7npsB41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
C [auth B3]	14-3-3	e7npsB31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
B [auth B2]	14-3-3	e7npsB21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)
A [auth B1]	Aldedh	e7npsB11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Aldedh	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth P1], H [auth P2], I [auth P3]	PF00082	Subtilase family (Peptidase_S8)	Subtilase family	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7 ...	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth P1], H [auth P2], I [auth P3]	Mycosin-5	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	ESX-5 secretion system ATPase EccB5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	-	cell periphery cellular anatomical structure plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth P1], H [auth P2], I [auth P3]	IPR015500	Peptidase S8, subtilisin-related	Family
G [auth P1], H [auth P2], I [auth P3]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
G [auth P1], H [auth P2], I [auth P3]	IPR023834	Type VII secretion system peptidase S8A, mycosin	Family
G [auth P1], H [auth P2], I [auth P3]	IPR023827	Peptidase S8, subtilisin, Asp-active site	Active Site
G [auth P1], H [auth P2], I [auth P3]	IPR000209	Peptidase S8/S53 domain	Domain
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR044857	Type VII secretion system EccB, repeat 1 domain	Homologous Superfamily
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR007795	Type VII secretion system EccB	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6]	IPR042485	Type VII secretion system EccB, repeat 3 domain	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5] A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth B6], G [auth P1], H [auth P2], I [auth P3]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Type VII Secretion Systems	Mycobacterial secretion system ESX-5 inner membrane complex, Composite C1 model

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.