Structure of the in situ yeast NPC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth 0] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090959 | 3002255 | SCOP2B (2022-06-29) |
| CA [auth Y] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090959 | 3002255 | SCOP2B (2022-06-29) |
| U [auth Q] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
| V [auth R] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
| W [auth S] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
| X [auth T] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090311 | 3002255 | SCOP2B (2022-06-29) |
| BA [auth X] | SCOP2 Family | Canonical RBD | 8106273 | 4000236 | SCOP2 (2022-06-29) |
| BA [auth X] | SCOP2 Superfamily | RNA-binding domain, RBD | 8106274 | 3000110 | SCOP2 (2022-06-29) |
| DB [auth a] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090980 | 3002255 | SCOP2B (2022-06-29) |
| DB [auth a] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090978 | 3000456 | SCOP2B (2022-06-29) |
| KA [auth h] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090980 | 3002255 | SCOP2B (2022-06-29) |
| KA [auth h] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090978 | 3000456 | SCOP2B (2022-06-29) |
| LA [auth i] | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054123 | 3002276 | SCOP2B (2022-06-29) |
| XA [auth b] | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054123 | 3002276 | SCOP2B (2022-06-29) |
| MA [auth j] | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054129 | 3002276 | SCOP2B (2022-06-29) |
| YA [auth c] | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054129 | 3002276 | SCOP2B (2022-06-29) |
| RA [auth o] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| SA [auth p] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| TA [auth q] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| UA [auth r] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| VA [auth s] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| WA [auth t] | SCOP2B Superfamily | DLC-like | 8082847 | 3000821 | SCOP2B (2022-06-29) |
| B [auth 1] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090960 | 3002255 | SCOP2B (2022-06-29) |
| B [auth 1] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090971 | 3000456 | SCOP2B (2022-06-29) |
| DA [auth Z] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090971 | 3000456 | SCOP2B (2022-06-29) |
| DA [auth Z] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090960 | 3002255 | SCOP2B (2022-06-29) |
| AA [auth W] | SCOP2B Superfamily | RNA-binding domain, RBD | 8087392 | 3000110 | SCOP2B (2022-06-29) |
| Y [auth U] | SCOP2B Superfamily | RNA-binding domain, RBD | 8087392 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | e7n9f01 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| CA [auth Y] | e7n9fY1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| Q [auth M] | e7n9fM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| S [auth O] | e7n9fO1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| BA [auth X] | e7n9fX1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| Z [auth V] | e7n9fV1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| EA [auth u] | e7n9fu01 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: ABC_tran | F: | ECOD (20:10:01) | |
| DB [auth a] | e7n9fa1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: MlaD | F: | ECOD (20:10:01) | |
| KA [auth h] | e7n9fh1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: MlaD | F: | ECOD (20:10:01) | |
| LA [auth i] | e7n9fi1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| XA [auth b] | e7n9fb1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| MA [auth j] | e7n9fj1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| YA [auth c] | e7n9fc1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| NA [auth k] | e7n9fk1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| ZA [auth d] | e7n9fd1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| AB [auth e] | e7n9fe1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| OA [auth l] | e7n9fl1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| RA [auth o] | e7n9fo1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| SA [auth p] | e7n9fp1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| TA [auth q] | e7n9fq1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| UA [auth r] | e7n9fr1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| VA [auth s] | e7n9fs1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| WA [auth t] | e7n9ft1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| B [auth 1] | e7n9f11 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) | |
| DA [auth Z] | e7n9fZ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| AA [auth W] | e7n9fW1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Sybindin | F: | ECOD (20:10:01) | |
| Y [auth U] | e7n9fU1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ion_trans | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth 0], CA [auth Y] | PF05064 | Nsp1-like C-terminal region (Nsp1_C) | Nsp1-like C-terminal region | - | Family |
| A [auth 0], CA [auth Y] | PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Repeat |
| A [auth 0], CA [auth Y] | PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat |
| PF23300 | Nucleoporin Nup120, HEAT repeats (HEAT_Nup120) | Nucleoporin Nup120, HEAT repeats | - | Repeat | |
| PF22114 | Nucleoporin NUP120, helical domain (NUP120_helical_2) | Nucleoporin NUP120, helical domain | This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ... | Domain | |
| PF12110 | Nuclear protein 96 (Nup96) | Nuclear protein 96 | Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ... | Domain | |
| PF11715 | Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160) | Nucleoporin Nup120/160, beta-propeller domain | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| F [auth B], I [auth E], L [auth H], O [auth K] | PF22114 | Nucleoporin NUP120, helical domain (NUP120_helical_2) | Nucleoporin NUP120, helical domain | This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ... | Domain |
| F [auth B], I [auth E], L [auth H], O [auth K] | PF07575 | Nup85 Nucleoporin (Nucleopor_Nup85) | Nup85 Nucleoporin | - | Repeat |
| F [auth B], I [auth E], L [auth H], O [auth K] | PF11715 | Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160) | Nucleoporin Nup120/160, beta-propeller domain | - | Repeat |
| F [auth B], I [auth E], L [auth H], O [auth K] | PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | - | Coiled-coil |
| F [auth B], I [auth E], L [auth H], O [auth K] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| G [auth C], J [auth F], M [auth I], P [auth L] | PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Family |
| G [auth C], J [auth F], M [auth I], P [auth L] | PF07575 | Nup85 Nucleoporin (Nucleopor_Nup85) | Nup85 Nucleoporin | - | Repeat |
| G [auth C], J [auth F], M [auth I], P [auth L] | PF12110 | Nuclear protein 96 (Nup96) | Nuclear protein 96 | Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ... | Domain |
| G [auth C], J [auth F], M [auth I], P [auth L] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| Q [auth M], S [auth O] | PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat |
| Q [auth M], S [auth O] | PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Family |
| Q [auth M], S [auth O] | PF01221 | Dynein light chain type 1 (Dynein_light) | Dynein light chain type 1 | Domain | |
| R [auth N], T [auth P] | PF10487 | Nucleoporin Nup188, N-terminal (Nup188_N) | Nucleoporin Nup188, N-terminal | - | Repeat |
| R [auth N], T [auth P] | PF18378 | Nuclear pore protein NUP188 C-terminal domain (Nup188_C) | Nuclear pore protein NUP188 C-terminal domain | - | Repeat |
| R [auth N], T [auth P] | PF21093 | Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III) | Nucleoporin Nup188, N-terminal subdomain III | - | Repeat |
| R [auth N], T [auth P] | PF01221 | Dynein light chain type 1 (Dynein_light) | Dynein light chain type 1 | Domain | |
| U [auth Q], V [auth R], W [auth S], X [auth T] | PF04097 | Nup93/Nic96 (Nic96) | Nup93/Nic96 | - | Repeat |
| U [auth Q], V [auth R], W [auth S], X [auth T] | PF01221 | Dynein light chain type 1 (Dynein_light) | Dynein light chain type 1 | Domain | |
| B [auth 1], DA [auth Z] | PF05064 | Nsp1-like C-terminal region (Nsp1_C) | Nsp1-like C-terminal region | - | Family |
| B [auth 1], DA [auth Z] | PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Repeat |
| B [auth 1], DA [auth Z] | PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat |














