7MUS | pdb_00007mus

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DG [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
G [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
HA [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
IB [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
ID [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
IF [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
MC [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
RF [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
T [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
TA [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
VB [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
WE [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
BE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
CG [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
EC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
F [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
GA [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
HB [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
HF [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
KC [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
QF [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
S [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
SA [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
UB [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VE [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
AE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DG [auth FL]Secretin_Ne7musFL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
G [auth GL]Secretin_Ne7musGL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HA [auth IL]Secretin_Ne7musIL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
IB [auth KL]Secretin_Ne7musKL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
ID [auth AL]Secretin_Ne7musAL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
IF [auth DL]Secretin_Ne7musDL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
MC [auth ML]Secretin_Ne7musML1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
RF [auth EL]Secretin_Ne7musEL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
T [auth HL]Secretin_Ne7musHL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
TA [auth JL]Secretin_Ne7musJL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
VB [auth LL]Secretin_Ne7musLL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
WE [auth CL]Secretin_Ne7musCL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
BE [auth BL]Secretin_Ne7musBL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
CG [auth FK]Secretin_Ne7musFK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
EC [auth AK]Secretin_Ne7musAK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
F [auth GK]Secretin_Ne7musGK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GA [auth IK]Secretin_Ne7musIK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HB [auth KK]Secretin_Ne7musKK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HF [auth DK]Secretin_Ne7musDK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
KC [auth MK]Secretin_Ne7musMK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
QF [auth EK]Secretin_Ne7musEK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
S [auth HK]Secretin_Ne7musHK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
SA [auth JK]Secretin_Ne7musJK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
UB [auth LK]Glyco_transf_41e7musLK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
VE [auth CK]Secretin_Ne7musCK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
AE [auth BK]Secretin_Ne7musBK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
A [auth AG]Secretin_Ne7musAG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
BA [auth BG]Secretin_Ne7musBG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
CB [auth CG]Secretin_Ne7musCG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DC [auth DG]Secretin_Ne7musDG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
EG [auth HG]Secretin_Ne7musHG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
FE [auth FG]Secretin_Ne7musFG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
FG [auth IG]Secretin_Ne7musIG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GF [auth GG]Secretin_Ne7musGG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HG [auth KG]Secretin_Ne7musKG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
IG [auth LG]Secretin_Ne7musLG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
JG [auth MG]Secretin_Ne7musMG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
LG [auth OG]Secretin_Ne7musOG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
MG [auth PG]Secretin_Ne7musPG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
KG [auth NG]Secretin_Ne7musNG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
GG [auth JG]Secretin_Ne7musJG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
ED [auth EG]Secretin_Ne7musEG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DotD- - -
Type IV secretion protein IcmK---
Neurogenic locus notch---
Unknown protein fragment---
DotC- - -
Unknown protein fragment---
DUF2807 domain-containing protein---
Outer membrane protein, OmpA family protein- -
Inner membrane lipoprotein YiaD- -
DotF- - -
IcmE protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR031618Putative type IV secretory system proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR057481Decapeptide repeatRepeat
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily