7MID
Sub-complex of Cas4-Cas1-Cas2 bound PAM containing DNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01867 | e7midA1 | A: alpha complex topology | X: Cas1 (From Topology) | H: Cas1 (From Topology) | T: Cas1 | F: PF01867 | ECOD (1.6) |
A | PF01930 | e7midA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF01930 | ECOD (1.6) |
B | PF01867 | e7midB1 | A: alpha complex topology | X: Cas1 (From Topology) | H: Cas1 (From Topology) | T: Cas1 | F: PF01867 | ECOD (1.6) |
C | PF09827 | e7midC1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR associated protein Cas2-like (From Topology) | T: CRISPR associated protein Cas2-like | F: PF09827 | ECOD (1.6) |
D | PF09827 | e7midD1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR associated protein Cas2-like (From Topology) | T: CRISPR associated protein Cas2-like | F: PF09827 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01867 | CRISPR associated protein Cas1 (Cas_Cas1) | CRISPR associated protein Cas1 | - | Family | |
PF12705 | PD-(D/E)XK nuclease superfamily (PDDEXK_1) | PD-(D/E)XK nuclease superfamily | Members of this family belong to the PD-(D/E)XK nuclease superfamily | Domain | |
PF01930 | Domain of unknown function DUF83 (Cas_Cas4) | Domain of unknown function DUF83 | - | Family | |
PF09827 | CRISPR associated protein Cas2 (CRISPR_Cas2) | CRISPR associated protein Cas2 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002729 | CRISPR-associated protein Cas1 | Family | |
IPR042206 | CRISPR-associated endonuclease Cas1, C-terminal domain | Homologous Superfamily | |
IPR042211 | CRISPR-associated endonuclease Cas1, N-terminal domain | Homologous Superfamily | |
IPR011604 | PD-(D/E)XK endonuclease-like domain superfamily | Homologous Superfamily | |
IPR022765 | Dna2/Cas4, domain of unknown function DUF83 | Domain | |
IPR013343 | CRISPR-associated protein Cas4 | Family | |
IPR019199 | Virulence-associated protein D / CRISPR associated protein Cas2 | Family | |
IPR021127 | CRISPR-associated endonuclease Cas2 | Family |