7MFM

Glutamate synthase, glutamate dehydrogenase counter-enzyme complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	MtdA-like	8106008	3000046	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	MtdA-like	8106008	3000046	SCOP2B (2022-06-29)
G [auth C]	SCOP2 Family	Aminoacid dehydrogenase-like	8106007	4000004	SCOP2 (2022-06-29)
G [auth C]	SCOP2 Superfamily	MtdA-like	8106008	3000046	SCOP2 (2022-06-29)
H [auth D]	SCOP2B Superfamily	MtdA-like	8106008	3000046	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	MtdA-like	8106008	3000046	SCOP2B (2022-06-29)
J [auth F]	SCOP2B Superfamily	MtdA-like	8106008	3000046	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00208	e7mfmA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
A	PF02812	e7mfmA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
F [auth B]	PF00208	e7mfmB2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
F [auth B]	PF02812	e7mfmB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
G [auth C]	PF00208	e7mfmC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
G [auth C]	PF02812	e7mfmC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
H [auth D]	PF00208	e7mfmD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
H [auth D]	PF02812	e7mfmD1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
I [auth E]	PF00208	e7mfmE2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
I [auth E]	PF02812	e7mfmE1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
J [auth F]	PF00208	e7mfmF2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF00208	ECOD (1.6)
J [auth F]	PF02812	e7mfmF1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: PF02812	ECOD (1.6)
B [auth G]	PF01493	e7mfmG3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Alpha subunit of glutamate synthase-C (From Topology)	T: Alpha subunit of glutamate synthase-C	F: PF01493	ECOD (1.6)
B [auth G]	PF00310	e7mfmG5	A: a+b two layers	X: Alpha-beta plaits	H: Alpha subunit of glutamate synthase, insertion domain (From Topology)	T: Alpha subunit of glutamate synthase, insertion domain	F: PF00310	ECOD (1.6)
B [auth G]	PF00310	e7mfmG4	A: a+b four layers	X: Ntn/PP2C	H: Ntn	T: Class II glutamine amidotransferases	F: PF00310	ECOD (1.6)
B [auth G]	PF01645	e7mfmG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01645	ECOD (1.6)
B [auth G]	PF04898	e7mfmG1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04898	ECOD (1.6)
C [auth H]	PF01493	e7mfmH3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Alpha subunit of glutamate synthase-C (From Topology)	T: Alpha subunit of glutamate synthase-C	F: PF01493	ECOD (1.6)
C [auth H]	PF00310	e7mfmH5	A: a+b two layers	X: Alpha-beta plaits	H: Alpha subunit of glutamate synthase, insertion domain (From Topology)	T: Alpha subunit of glutamate synthase, insertion domain	F: PF00310	ECOD (1.6)
C [auth H]	PF00310	e7mfmH4	A: a+b four layers	X: Ntn/PP2C	H: Ntn	T: Class II glutamine amidotransferases	F: PF00310	ECOD (1.6)
C [auth H]	PF01645	e7mfmH2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01645	ECOD (1.6)
C [auth H]	PF04898	e7mfmH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF04898	ECOD (1.6)
D [auth I]	PF14691	e7mfmI2	A: alpha arrays	X: alpha-helical ferredoxin-like	H: alpha-helical ferredoxin (From Topology)	T: alpha-helical ferredoxin	F: PF14691	ECOD (1.6)
D [auth I]	PF07992	e7mfmI1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: PF07992	ECOD (1.6)
E [auth J]	PF14691	e7mfmJ1	A: alpha arrays	X: alpha-helical ferredoxin-like	H: alpha-helical ferredoxin (From Topology)	T: alpha-helical ferredoxin	F: PF14691	ECOD (1.6)
E [auth J]	PF07992	e7mfmJ2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: PF07992	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	-	Domain
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	-	Domain
B [auth G], C [auth H]	PF01645	Conserved region in glutamate synthase (Glu_synthase)	Conserved region in glutamate synthase	This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned regi ...	This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.	Domain
B [auth G], C [auth H]	PF01493	GXGXG motif (GXGXG)	GXGXG motif	-	Family
B [auth G], C [auth H]	PF00310	Glutamine amidotransferases class-II (GATase_2)	Glutamine amidotransferases class-II	-	Domain
B [auth G], C [auth H]	PF04898	Glutamate synthase central domain (Glu_syn_central)	Glutamate synthase central domain	The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology [1]. This domain appears to be a rudimentary form of the FMN-binding TIM barrel accordi ...	The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology [1]. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP.	Domain
D [auth I], E [auth J]	PF07992	Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2)	Pyridine nucleotide-disulphide oxidoreductase	This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	Domain
D [auth I], E [auth J]	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster (Fer4_20)	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This doma ...	Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This domain carries two Fe4-S4 clusters.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	Glutamate dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors glutamate dehydrogenase (NAD+) activity oxidoreductase activity glutamate dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding	organic substance metabolic process amino acid metabolic process primary metabolic process metabolic process	-
B [auth G], C [auth H]	Glutamate synthase (NADPH) large chain	-	-	-
D [auth I], E [auth J]	Glutamate synthase (NADPH) small chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR014362	Glutamate dehydrogenase	Family
A, F [auth B], G [auth C], H [auth D], I [auth E], A, F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site