Annotations: 7LBJ

Crystal structure of octaprenyl diphosphate synthase from Stenotrophomonas maltophilia

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d7lbjb1	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ],	SCOPe (2.08)
B	d7lbjb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ],	SCOPe (2.08)
A	d7lbja1	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ],	SCOPe (2.08)
A	d7lbja2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Terpenoid synthases	8102351	3001615	SCOP2B (2022-06-29)
A	SCOP2 Family	Isoprenyl diphosphate synthases	8102350	4001453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Terpenoid synthases	8102351	3001615	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Epimerase	e7lbjB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Epimerase	ECOD (v294.1)
A	Epimerase	e7lbjA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Epimerase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Geranyltranstransferase	prenyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process phospholipid biosynthetic process phospholipid metabolic process organophosphate metabolic process organophosphate biosynthetic process biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process phospholipid biosynthetic process phospholipid metabolic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR053378	Prenyl diphosphate synthase	Family
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A, B	IPR000092	Polyprenyl synthetase-like	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.