7KW8 | pdb_00007kw8

NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Isochorismatase	e7kw8A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Isochorismatase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.970	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain	CATH (utative)
A	3.20.170.30	Alpha Beta	Alpha-Beta Barrel	ADP-ribosylation fold		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family (PTS_2-RNA)	RNA 2'-phosphotransferase, Tpt1 / KptA family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	tRNA 2'-phosphotransferase	pentosyltransferase activity NAD+ poly-ADP-ribosyltransferase activity glycosyltransferase activity transferase activity catalytic activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid tRNA 2'-phosphotransferase activity catalytic activity, acting on a tRNA phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA splicing, via endonucleolytic cleavage and ligation nucleic acid biosynthetic process biosynthetic process RNA splicing, via endonucleolytic cleavage and ligation tRNA processing RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process tRNA metabolic process tRNA splicing, via endonucleolytic cleavage and ligation nucleic acid biosynthetic process biosynthetic process RNA splicing, via endonucleolytic cleavage and ligation tRNA processing metabolic process cellular process RNA processing macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR042081	RNA 2'-phosphotransferase, C-terminal domain	Homologous Superfamily
A	IPR002745	Phosphotransferase KptA/Tpt1	Family
A	IPR022928	RNA 2'-phosphotransferase KptA, putative	Family
A	IPR042080	RNA 2'-phosphotransferase, N-terminal domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.