7KM3 | pdb_00007km3

Dodecameric Structure of the Chlamydia trachomatis Flavin Prenyltransferase UbiX Ortholog CT220 with FMN and DMAP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth K]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
H [auth F]	SCOP2 Family	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105767	4003907	SCOP2 (2022-06-29)
H [auth F]	SCOP2 Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2 (2022-06-29)
G [auth E]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)
A [auth L]	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8105768	3001775	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth K]	Flavoprotein	e7km3K1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
K [auth J]	Flavoprotein	e7km3J1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
J [auth H]	Flavoprotein	e7km3H1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
I [auth G]	Flavoprotein	e7km3G1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
H [auth F]	Flavoprotein	e7km3F1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
G [auth E]	Flavoprotein	e7km3E1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
F [auth D]	Flavoprotein	e7km3D1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
E [auth C]	Flavoprotein	e7km3C1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
D [auth B]	Flavoprotein	e7km3B1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
C [auth A]	Flavoprotein	e7km3A1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
B [auth I]	Flavoprotein	e7km3I1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)
A [auth L]	Flavoprotein	e7km3L1	A: a/b three-layered sandwiches	X: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	H: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD (From Topology)	T: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	F: Flavoprotein	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	PF02441	Flavoprotein (Flavoprotein)	Flavoprotein	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme cataly ...	This domain is found in diverse flavoprotein enzymes, including covering the whole length of the sequence of epidermin biosynthesis protein from Staphylococcus epidermidis (EpiD, Swiss:P30197), which has been shown to bind FMN [1]. This enzyme catalyses the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance [2]. dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase Swiss:P33751 (EC:4.1.1.-) [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	Flavin prenyltransferase UbiX	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity flavin prenyltransferase activity carboxy-lyase activity lyase activity carbon-carbon lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR036551	Flavin prenyltransferase-like	Homologous Superfamily
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR003382	Flavoprotein	Domain
A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], A [auth L], B [auth I], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth J], L [auth K]	IPR004507	Flavin prenyltransferase UbiX-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.