7KHA | pdb_00007kha

Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	F_UNCLASSIFIED	e7khaH1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
G	F_UNCLASSIFIED	e7khaG1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
F	F_UNCLASSIFIED	e7khaF1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
E	F_UNCLASSIFIED	e7khaE1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e7khaD1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e7khaC1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e7khaB1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: F_UNCLASSIFIED	ECOD (1.6)
A	Cas_Cas5d_1	e7khaA1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR system Cas5 homologs (From Topology)	T: CRISPR system Cas5 homologs	F: Cas_Cas5d_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I	PF09709	CRISPR-associated protein (Cas_Csd1) (Cas_Csd1)	CRISPR-associated protein (Cas_Csd1)	-	Family
B, C, D, E, F B, C, D, E, F, G, H	PF05107	CRISPR-associated protein Cas7 (Cas_Cas7)	CRISPR-associated protein Cas7	-	Family
A	PF09704	CRISPR-associated protein (Cas_Cas5) (Cas_Cas5d)	CRISPR-associated protein (Cas_Cas5)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L [auth J]	RNA (45-MER)	-	-	-
J [auth K], K [auth L]	CRISPR-associated protein, CT1133 family	-	-	-
I	CRISPR-associated protein, CT1133 family	-	-	-
B, C, D, E, F B, C, D, E, F, G, H	CRISPR-associated protein, TM1801 family	-	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
A	CRISPR-associated protein, CT1134 family	hydrolase activity catalytic activity endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth K], K [auth L]	IPR010144	CRISPR-associated protein, Csd1-type	Family
I	IPR010144	CRISPR-associated protein, Csd1-type	Family
B, C, D, E, F B, C, D, E, F, G, H	IPR006482	CRISPR-associated protein Cas7, subtype I-B/I-C	Family
B, C, D, E, F B, C, D, E, F, G, H	IPR013418	Type I-C CRISPR-associated protein Cas7/Csd2	Family
A	IPR021124	CRISPR-associated protein, Cas5	Family
A	IPR010155	CRISPR pre-crRNA endoribonuclease Cas5d	Family
A	IPR013422	CRISPR-associated protein Cas5, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.