7KBB

Cryo-EM structure of the HCMV pentamer bound by Fabs 2-18 and 8I21


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07686e7kbbA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
BPF07686e7kbbB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
CF_UNCLASSIFIEDe7kbbC1 A: beta barrelsX: UL128 C-terminal domain (From Topology)H: UL128 C-terminal domain (From Topology)T: UL128 C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
DPF11668e7kbbD2 A: beta barrelsX: IL8-related (From Homology)H: IL8-relatedT: chemokine-related domain in glycoprotein L (gL)F: PF11668ECOD (1.6)
DPF11668e7kbbD1 A: beta barrelsX: UL131A-likeH: UL130 C-terminal domain (From Topology)T: UL130 C-terminal domainF: PF11668ECOD (1.6)
EF_UNCLASSIFIEDe7kbbE1 A: beta barrelsX: UL131A-likeH: UL131A (From Topology)T: UL131AF: F_UNCLASSIFIEDECOD (1.6)
F [auth H]PF07686e7kbbH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
G [auth L]PF07686e7kbbL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV3 -ul131a | envelope protein ul128SAbDab (2024-05-31)
Light ChainIGKV1 Kappaul131a | envelope protein ul128SAbDab (2024-05-31)
F [auth H]Heavy ChainIGHV3 -envelope glycoprotein ul130SAbDab (2024-05-31)
G [auth L]Light ChainIGKV3 Kappaenvelope glycoprotein ul130SAbDab (2024-05-31)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF11668HCMV glycoprotein pUL130 (Gp_UL130)HCMV glycoprotein pUL130- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
2-18 Fab Heavy Chain---
2-18 Fab Light Chain---
Envelope protein UL128-
Envelope glycoprotein UL130-
UL131A-
F [auth H]8I21 Fab Heavy Chain---
G [auth L]8I21 Fab Light Chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR021038Herpesvirus UL130, cytomegalovirusFamily