7FIX | pdb_00007fix

Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
V [auth K2]SCOP2B SuperfamilyPhotosystem I reaction center subunit X, PsaK 8034288 3000859 SCOP2B (2022-06-29)
IA [auth K3]SCOP2B SuperfamilyPhotosystem I reaction center subunit X, PsaK 8034288 3000859 SCOP2B (2022-06-29)
I [auth K1]SCOP2B SuperfamilyPhotosystem I reaction center subunit X, PsaK 8034288 3000859 SCOP2B (2022-06-29)
U [auth J2]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8034287 3000824 SCOP2B (2022-06-29)
HA [auth J3]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8034287 3000824 SCOP2B (2022-06-29)
H [auth J1]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8034287 3000824 SCOP2B (2022-06-29)
T [auth I2]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8034286 3000819 SCOP2B (2022-06-29)
GA [auth I3]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8034286 3000819 SCOP2B (2022-06-29)
G [auth I1]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8034286 3000819 SCOP2B (2022-06-29)
S [auth F2]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8034284 3000813 SCOP2B (2022-06-29)
FA [auth F3]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8034284 3000813 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8034284 3000813 SCOP2B (2022-06-29)
R [auth E2]SCOP2B SuperfamilyElectron transport accessory proteins 8034282 3000325 SCOP2B (2022-06-29)
EA [auth E3]SCOP2B SuperfamilyElectron transport accessory proteins 8034282 3000325 SCOP2B (2022-06-29)
E [auth E1]SCOP2B SuperfamilyElectron transport accessory proteins 8034282 3000325 SCOP2B (2022-06-29)
Q [auth D2]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8034279 3000951 SCOP2B (2022-06-29)
DA [auth D3]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8034279 3000951 SCOP2B (2022-06-29)
D [auth D1]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8034279 3000951 SCOP2B (2022-06-29)
P [auth C2]SCOP2B Superfamily4Fe-4S ferredoxins 8034277 3000020 SCOP2B (2022-06-29)
CA [auth C3]SCOP2B Superfamily4Fe-4S ferredoxins 8034277 3000020 SCOP2B (2022-06-29)
C [auth C1]SCOP2B Superfamily4Fe-4S ferredoxins 8034277 3000020 SCOP2B (2022-06-29)
O [auth B2]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034274 3000850 SCOP2B (2022-06-29)
BA [auth B3]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034274 3000850 SCOP2B (2022-06-29)
B [auth B1]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034274 3000850 SCOP2B (2022-06-29)
Z [auth X2]SCOP2B SuperfamilySubunit PsaX of photosystem I reaction centre 8034292 3000838 SCOP2B (2022-06-29)
MA [auth X3]SCOP2B SuperfamilySubunit PsaX of photosystem I reaction centre 8034292 3000838 SCOP2B (2022-06-29)
M [auth X1]SCOP2B SuperfamilySubunit PsaX of photosystem I reaction centre 8034292 3000838 SCOP2B (2022-06-29)
Y [auth R2]SCOP2B Superfamily2Fe-2S ferredoxin-like 8034515 3000113 SCOP2B (2022-06-29)
LA [auth R3]SCOP2B Superfamily2Fe-2S ferredoxin-like 8034515 3000113 SCOP2B (2022-06-29)
L [auth R1]SCOP2B Superfamily2Fe-2S ferredoxin-like 8034515 3000113 SCOP2B (2022-06-29)
X [auth M2]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8034290 3000829 SCOP2B (2022-06-29)
KA [auth M3]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8034290 3000829 SCOP2B (2022-06-29)
K [auth M1]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8034290 3000829 SCOP2B (2022-06-29)
W [auth L2]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8034291 3000870 SCOP2B (2022-06-29)
JA [auth L3]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8034291 3000870 SCOP2B (2022-06-29)
J [auth L1]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8034291 3000870 SCOP2B (2022-06-29)
N [auth A2]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034272 3000850 SCOP2B (2022-06-29)
AA [auth A3]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034272 3000850 SCOP2B (2022-06-29)
A [auth A1]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8034272 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
V [auth K2]e7fixK21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
IA [auth K3]e7fixK31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
I [auth K1]e7fixK11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
U [auth J2]e7fixJ21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
HA [auth J3]e7fixJ31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
H [auth J1]e7fixJ11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
T [auth I2]e7fixI21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
GA [auth I3]e7fixI31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
G [auth I1]e7fixI11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
S [auth F2]e7fixF21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
FA [auth F3]e7fixF31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
F [auth F1]e7fixF11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
R [auth E2]e7fixE21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
EA [auth E3]e7fixE31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
E [auth E1]e7fixE11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
Q [auth D2]e7fixD21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
DA [auth D3]e7fixD31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
D [auth D1]e7fixD11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
P [auth C2]e7fixC21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
CA [auth C3]e7fixC31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
C [auth C1]e7fixC11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
O [auth B2]e7fixB21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
BA [auth B3]e7fixB31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
B [auth B1]e7fixB11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
Z [auth X2]e7fixX21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
MA [auth X3]e7fixX31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
M [auth X1]e7fixX11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
Y [auth R2]e7fixR21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
LA [auth R3]e7fixR31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
L [auth R1]e7fixR11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
X [auth M2]e7fixM21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
KA [auth M3]e7fixM31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
K [auth M1]e7fixM11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
W [auth L2]e7fixL21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
JA [auth L3]e7fixL31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
J [auth L1]e7fixL11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
N [auth A2]e7fixA21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
AA [auth A3]e7fixA31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)
A [auth A1]e7fixA11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Peptidase_S29F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth K1],
IA [auth K3],
V [auth K2]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
H [auth J1],
HA [auth J3],
U [auth J2]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
G [auth I1],
GA [auth I3],
T [auth I2]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
F [auth F1],
FA [auth F3],
S [auth F2]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
E [auth E1],
EA [auth E3],
R [auth E2]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
D [auth D1],
DA [auth D3],
Q [auth D2]
PF02531PsaD (PsaD)PsaD- Family
C [auth C1],
CA [auth C3],
P [auth C2]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B [auth B1],
BA [auth B3],
O [auth B2]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
L [auth R1],
LA [auth R3],
Y [auth R2]
PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain
K [auth M1],
KA [auth M3],
X [auth M2]
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
J [auth L1],
JA [auth L3],
W [auth L2]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
A [auth A1],
AA [auth A3],
N [auth A2]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth K1],
IA [auth K3],
V [auth K2]
Photosystem I reaction center subunit PsaK-
H [auth J1],
HA [auth J3],
U [auth J2]
Photosystem I reaction center subunit IX-
G [auth I1],
GA [auth I3],
T [auth I2]
Photosystem I reaction center subunit VIII-
F [auth F1],
FA [auth F3],
S [auth F2]
Photosystem I reaction center subunit III-
E [auth E1],
EA [auth E3],
R [auth E2]
Photosystem I reaction center subunit IV-
D [auth D1],
DA [auth D3],
Q [auth D2]
Photosystem I reaction center subunit II-
C [auth C1],
CA [auth C3],
P [auth C2]
Photosystem I iron-sulfur center
B [auth B1],
BA [auth B3],
O [auth B2]
Photosystem I P700 chlorophyll a apoprotein A2
M [auth X1],
MA [auth X3],
Z [auth X2]
Photosystem I 4.8K protein- - -
L [auth R1],
LA [auth R3],
Y [auth R2]
Ferredoxin-1 -
K [auth M1],
KA [auth M3],
X [auth M2]
Photosystem I reaction center subunit XII-
J [auth L1],
JA [auth L3],
W [auth L2]
Photosystem I reaction center subunit XI-
A [auth A1],
AA [auth A3],
N [auth A2]
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth K1],
IA [auth K3],
V [auth K2]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
I [auth K1],
IA [auth K3],
V [auth K2]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
I [auth K1],
IA [auth K3],
V [auth K2]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
I [auth K1],
IA [auth K3],
V [auth K2]
IPR017492Photosystem I reaction center subunit PsaKFamily
H [auth J1],
HA [auth J3],
U [auth J2]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
H [auth J1],
HA [auth J3],
U [auth J2]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
G [auth I1],
GA [auth I3],
T [auth I2]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
G [auth I1],
GA [auth I3],
T [auth I2]
IPR001302Photosystem I reaction centre subunit VIIIFamily
F [auth F1],
FA [auth F3],
S [auth F2]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F [auth F1],
FA [auth F3],
S [auth F2]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
E [auth E1],
EA [auth E3],
R [auth E2]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth E1],
EA [auth E3],
R [auth E2]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D [auth D1],
DA [auth D3],
Q [auth D2]
IPR003685Photosystem I PsaDFamily
D [auth D1],
DA [auth D3],
Q [auth D2]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
C [auth C1],
CA [auth C3],
P [auth C2]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth C1],
CA [auth C3],
P [auth C2]
IPR050157Photosystem I iron-sulfur centerFamily
C [auth C1],
CA [auth C3],
P [auth C2]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth C1],
CA [auth C3],
P [auth C2]
IPR017491Photosystem I protein PsaCFamily
B [auth B1],
BA [auth B3],
O [auth B2]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth B1],
BA [auth B3],
O [auth B2]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth B1],
BA [auth B3],
O [auth B2]
IPR006244Photosystem I PsaBFamily
B [auth B1],
BA [auth B3],
O [auth B2]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
M [auth X1],
MA [auth X3],
Z [auth X2]
IPR036243Photosystem I PsaX superfamilyHomologous Superfamily
M [auth X1],
MA [auth X3],
Z [auth X2]
IPR012986Photosystem I PsaXFamily
L [auth R1],
LA [auth R3],
Y [auth R2]
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
L [auth R1],
LA [auth R3],
Y [auth R2]
IPR010241Ferredoxin [2Fe-2S], plant and bacteriaDomain
L [auth R1],
LA [auth R3],
Y [auth R2]
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
L [auth R1],
LA [auth R3],
Y [auth R2]
IPR012675Beta-grasp domain superfamilyHomologous Superfamily
L [auth R1],
LA [auth R3],
Y [auth R2]
IPR0060582Fe-2S ferredoxin, iron-sulphur binding siteBinding Site
K [auth M1],
KA [auth M3],
X [auth M2]
IPR010010Photosystem I PsaM, reaction centreFamily
K [auth M1],
KA [auth M3],
X [auth M2]
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
J [auth L1],
JA [auth L3],
W [auth L2]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
J [auth L1],
JA [auth L3],
W [auth L2]
IPR022980Photosystem I, reaction centre subunit XIFamily
J [auth L1],
JA [auth L3],
W [auth L2]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
A [auth A1],
AA [auth A3],
N [auth A2]
IPR006243Photosystem I PsaAFamily
A [auth A1],
AA [auth A3],
N [auth A2]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth A1],
AA [auth A3],
N [auth A2]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth A1],
AA [auth A3],
N [auth A2]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site