7FDV | pdb_00007fdv

Cryo-EM structure of the human cholesterol transporter ABCG1 in complex with cholesterol

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth D]		e7fdvD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: V-set	F:	ECOD (20:10:01)
A		e7fdvA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: V-set	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D]	PF19055	ABC-2 type transporter (ABC2_membrane_7)	ABC-2 type transporter	-	Family
A, B [auth D]	PF01061	ABC-2 type transporter (ABC2_membrane)	ABC-2 type transporter		Domain
A, B [auth D]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D]	ATP-binding cassette sub-family G member 1	binding phospholipid binding lipid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding binding phospholipid binding lipid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding sterol transfer activity lipid transporter activity lipid transfer activity transporter activity cholesterol transfer activity lipid transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ATP-dependent activity active transmembrane transporter activity ABC-type transporter activity ATPase-coupled lipid transmembrane transporter activity ABC-type sterol transporter activity transmembrane transporter activity phosphatidylcholine transporter activity ATPase-coupled intramembrane lipid transporter activity intramembrane lipid transporter activity phosphatidylcholine floppase activity floppase activity phospholipid transporter activity sterol binding alcohol binding steroid binding cholesterol binding protein heterodimerization activity protein binding protein dimerization activity toxin transmembrane transporter activity identical protein binding protein homodimerization activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	positive regulation of cholesterol efflux regulation of localization transport positive regulation of sterol transport positive regulation of biological process regulation of lipid transport organic hydroxy compound transport localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of sterol transport regulation of biological process positive regulation of cholesterol efflux regulation of localization transport positive regulation of sterol transport positive regulation of biological process regulation of lipid transport organic hydroxy compound transport localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of sterol transport regulation of biological process regulation of transport biological regulation lipid localization lipid transport positive regulation of lipid localization establishment of localization positive regulation of lipid transport positive regulation of transport regulation of lipid localization macromolecule localization cholesterol transport cholesterol efflux phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis reverse cholesterol transport regulation of cellular process regulation of cholesterol metabolic process sterol metabolic process steroid metabolic process regulation of steroid metabolic process regulation of lipid metabolic process cholesterol metabolic process alcohol metabolic process primary metabolic process regulation of primary metabolic process secondary alcohol metabolic process regulation of small molecule metabolic process small molecule metabolic process metabolic process cellular process regulation of metabolic process lipid metabolic process cellular localization intracellular lipid transport intracellular cholesterol transport intracellular transport intracellular sterol transport establishment of localization in cell amyloid precursor protein catabolic process protein metabolic process macromolecule metabolic process amyloid precursor protein metabolic process response to lipid response to stimulus response to chemical xenobiotic export from cell xenobiotic transport xenobiotic detoxification by transmembrane export across the plasma membrane detoxification export from cell export across plasma membrane response to toxic substance transmembrane transport developmental process regulation of developmental process cellular developmental process negative regulation of developmental process macrophage derived foam cell differentiation negative regulation of biological process regulation of cell differentiation negative regulation of macrophage derived foam cell differentiation foam cell differentiation cell differentiation negative regulation of cellular process regulation of macrophage derived foam cell differentiation negative regulation of cell differentiation plasma lipoprotein particle organization multicellular organismal process low-density lipoprotein particle remodeling protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling regulation of plasma lipoprotein particle levels cellular component organization protein-lipid complex remodeling cellular component organization or biogenesis cholesterol storage negative regulation of cholesterol storage lipid storage negative regulation of lipid localization regulation of lipid storage negative regulation of lipid storage nutrient storage regulation of cholesterol storage phospholipid transport organophosphate ester transport phospholipid efflux cellular response to high density lipoprotein particle stimulus cellular response to stimulus cellular response to lipoprotein particle stimulus establishment of protein localization protein transport glycoprotein transport intracellular protein localization carbohydrate derivative transport regulation of steroid biosynthetic process regulation of cholesterol biosynthetic process lipid biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of lipid metabolic process steroid biosynthetic process positive regulation of cellular process regulation of biosynthetic process secondary alcohol biosynthetic process regulation of alcohol biosynthetic process small molecule biosynthetic process cholesterol biosynthetic process positive regulation of cholesterol biosynthetic process positive regulation of steroid biosynthetic process biosynthetic process sterol biosynthetic process positive regulation of lipid biosynthetic process regulation of sterol biosynthetic process alcohol biosynthetic process positive regulation of cholesterol metabolic process positive regulation of steroid metabolic process regulation of lipid biosynthetic process positive regulation of small molecule metabolic process positive regulation of alcohol biosynthetic process positive regulation of sterol biosynthetic process sterol homeostasis cholesterol homeostasis positive regulation of protein metabolic process regulation of amyloid-beta formation positive regulation of amyloid-beta formation regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process positive regulation of macromolecule metabolic process amyloid-beta formation regulation of protein metabolic process regulation of macromolecule metabolic process positive regulation of amyloid precursor protein catabolic process regulation of protein localization positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport regulation of secretion by cell secretion by cell positive regulation of secretion secretion regulation of establishment of protein localization establishment of protein localization to extracellular region regulation of protein transport protein secretion positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of protein localization high-density lipoprotein particle remodeling	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane endosome intracellular vesicle recycling endosome cytoplasmic vesicle vesicle mitochondrion nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A, B [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B [auth D]	IPR050352	ATP-binding cassette subfamily G transporters	Family
A, B [auth D]	IPR043926	ABC transporter family G domain	Domain
A, B [auth D]	IPR005284	Pigment precursor permease/Protein ATP-binding cassette sub-family G	Family
A, B [auth D]	IPR003593	AAA+ ATPase domain	Domain
A, B [auth D]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A, B [auth D]	IPR013525	ABC-2 type transporter, transmembrane domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth D]	Pharos: P45844	colorectal cancer Weight Gain chronic kidney disease lung adenocarcinoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis adrenal cortex carcinoma breast cancer Crohn disease dermatomyositis exocrine pancreatic carcinoma large cell medulloblastoma lung cancer colorectal cancer Weight Gain chronic kidney disease lung adenocarcinoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis adrenal cortex carcinoma breast cancer Crohn disease dermatomyositis exocrine pancreatic carcinoma large cell medulloblastoma lung cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis colorectal carcinoma cutaneous lupus erythematosus Down syndrome invasive ductal breast carcinoma malignant mesothelioma myopathy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma atherosclerosis chronic obstructive pulmonary disease cystic fibrosis endometriosis juvenile dermatomyositis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth D]	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	ABC transporter G family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B [auth D]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B [auth D]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	ABCG1 cholesterol transporter in complex with cholesterol

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.