CryoEM Structures of Reconstituted V-ATPase, Oxr1 bound V1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth O] | SCOP2B Superfamily | Vacuolar ATP synthase subunit C | 8042806 | 3001744 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| P | Glyco_hydro_65N | e7fdeP1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| M [auth N] | Glyco_hydro_65N | e7fdeN1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| L [auth M] | Glyco_hydro_65N | e7fdeM1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| I [auth F] | Glyco_hydro_65N | e7fdeF1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| G [auth D] | Glyco_hydro_65N | e7fdeD1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| E [auth B] | Glyco_hydro_65N | e7fdeB1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| H [auth E] | Glyco_transf_41 | e7fdeE1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| F [auth C] | Glyco_transf_41 | e7fdeC1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| D [auth A] | Ion_trans | e7fdeA1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ion_trans | ECOD (v294.1) |
| O [auth J] | Glyco_hydro_65N | e7fdeJ1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| K [auth L] | Glyco_hydro_65N | e7fdeL1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| C [auth H] | Glyco_hydro_65N | e7fdeH1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| N [auth I] | Glyco_hydro_65N | e7fdeI1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| J [auth K] | Glyco_transf_41 | e7fdeK1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| B [auth G] | Glyco_hydro_65N | e7fdeG1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
| A [auth O] | Glyco_hydro_65N | e7fdeO1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_hydro_65N | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| L [auth M] | 1.10.287.3240 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (utative) | |
| B [auth G] | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07534 | TLDc domain (TLD) | TLDc domain | This domain is predicted to be an enzyme [1] and is often found associated with Pfam:PF01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices [2]. | Domain | |
| M [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
| L [auth M] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
| E [auth B], G [auth D], I [auth F] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| E [auth B], G [auth D], I [auth F] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| E [auth B], G [auth D], I [auth F] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| D [auth A], F [auth C], H [auth E] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| D [auth A], F [auth C], H [auth E] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| D [auth A], F [auth C], H [auth E] | PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain |
| D [auth A], F [auth C], H [auth E] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| C [auth H], K [auth L], O [auth J] | PF03179 | Vacuolar (H+)-ATPase G subunit (V-ATPase_G) | Vacuolar (H+)-ATPase G subunit | - | Coiled-coil |
| B [auth G], J [auth K], N [auth I] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
| A [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | Complete V-ATPase by cryo-EM, state 1 |














