7EWR | pdb_00007ewr

Cryo-EM structure of human GPR158 in complex with RGS7-Gbeta5 in a 2:2:2 ratio

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth F]	SCOP2B Superfamily	WD40 repeat-like	8105764	3001694	SCOP2B (2022-06-29)
F [auth D]	SCOP2 Family	WD40-repeat	8105763	4002744	SCOP2 (2022-06-29)
F [auth D]	SCOP2 Superfamily	WD40 repeat-like	8105764	3001694	SCOP2 (2022-06-29)
A [auth E]	SCOP2B Superfamily	Regulator of G-protein signaling, RGS	8062697	3000835	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Regulator of G-protein signaling, RGS	8062697	3000835	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth F]	Cu-oxidase_4	e7ewrF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Cu-oxidase_4	ECOD (v294.1)
F [auth D]	Glyco_transf_41	e7ewrD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v294.1)
A [auth E]	Glyco_transf_41	e7ewrE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v294.1)
E [auth C]	G-gamma	e7ewrC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: G-gamma	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B]	PF22572	GPR158/179 extracellular domain (GPR158_179_EC)	GPR158/179 extracellular domain	This entry represents the extracellular domain of GPR158 (also known as metabotropic glycine receptor, mGlyR) and GRP179. This domain has a Cache-like fold which participates in ligand recognition and also mediates dimerization and stability of the d ...	This entry represents the extracellular domain of GPR158 (also known as metabotropic glycine receptor, mGlyR) and GRP179. This domain has a Cache-like fold which participates in ligand recognition and also mediates dimerization and stability of the dimer [2]. GPR158 functions in cognition, stress-induced mood control, and synaptic development.	Domain
C [auth A], D [auth B]	PF00003	7 transmembrane sweet-taste receptor of 3 GCPR (7tm_3)	7 transmembrane sweet-taste receptor of 3 GCPR	This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G Pfam:PF07562, which is the human sweet-taste recepto ...	This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G Pfam:PF07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor Pfam:PF01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness [1].	Domain
B [auth F], F [auth D]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
A [auth E], E [auth C]	PF00615	Regulator of G protein signaling domain (RGS)	Regulator of G protein signaling domain	RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.	Domain
A [auth E], E [auth C]	PF18148	Regulator of G-protein signalling DHEX domain (RGS_DHEX)	Regulator of G-protein signalling DHEX domain	This domain is found in RGS9 (Class C) regulator of G-protein signalling (RGS) protein present in Mus musculus. RGS proteins attenuate heterotrimeric G-protein signalling by enhancing the intrinsic GTPase activity of G-alpha subunits and are vital fo ...	This domain is found in RGS9 (Class C) regulator of G-protein signalling (RGS) protein present in Mus musculus. RGS proteins attenuate heterotrimeric G-protein signalling by enhancing the intrinsic GTPase activity of G-alpha subunits and are vital for proper signal transduction kinetics. The domain is referred to as DEP helical extension (DHEX) because it is located next to N-terminal Dishevelled/Egl-10/Pleckstrin homology (DEP) domain. Both the DEP and DHEX domains are necessary, but not sufficient, to bind anchoring proteins such as RGS9 anchor protein. DHEX has no close structural homologs [1]. This domain is also found in regulator of G-protein signaling 7 (RGS7), the crystal structure of which has been solved [2].	Domain
A [auth E], E [auth C]	PF00610	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) (DEP)	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) prot ...	The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting [4-5]. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit [6-7].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B]	Probable G-protein coupled receptor 158	enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity neurotransmitter receptor activity G protein-coupled glycine receptor activity molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity G protein-coupled neurotransmitter receptor activity	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway cellular process signal transduction regulation of G protein-coupled receptor signaling pathway positive regulation of cell communication regulation of localization cellular localization transport modulation of chemical synaptic transmission positive regulation of neurotransmitter secretion positive regulation of biological process positive regulation of secretion by cell localization synaptic signaling regulation of secretion by cell secretion by cell positive regulation of secretion signal release establishment of localization in cell positive regulation of cellular process trans-synaptic signaling positive regulation of neurotransmitter transport neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport export from cell cell-cell signaling positive regulation of synaptic transmission neurotransmitter transport establishment of localization regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling positive regulation of transport regulation of neurotransmitter secretion anterograde trans-synaptic signaling positive regulation of signaling protein localization to cell periphery protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane system process nervous system process cognition regulation of cellular component organization cellular component organization regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region presynapse presynaptic membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure nucleus intracellular membrane-bounded organelle
B [auth F], F [auth D]	Guanine nucleotide-binding protein subunit beta-5	protein binding binding G-protein gamma-subunit binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-folding chaperone binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity protein binding binding G-protein gamma-subunit binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-folding chaperone binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus response to light stimulus dark adaptation response to light intensity cellular response to absence of light response to stimulus cellular response to light intensity cellular response to radiation response to absence of light cellular response to environmental stimulus cellular response to light stimulus response to radiation response to abiotic stimulus cellular process cellular response to stimulus response to light stimulus dark adaptation response to light intensity cellular response to absence of light response to stimulus cellular response to light intensity cellular response to radiation response to absence of light cellular response to environmental stimulus cellular response to light stimulus response to radiation response to abiotic stimulus cellular process cellular response to abiotic stimulus cellular response to nitrogen compound response to dopamine regulation of cellular process signaling cellular response to dopamine response to monoamine cell communication response to catecholamine cellular response to catecholamine stimulus signal transduction regulation of biological process G protein-coupled dopamine receptor signaling pathway biological regulation response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical G protein-coupled receptor signaling pathway light adaption	cellular anatomical structure cell tip cell pole cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex extrinsic component of plasma membrane cellular anatomical structure cell tip cell pole cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane membrane protein complex heterotrimeric G-protein complex side of membrane cytoplasmic side of plasma membrane GTPase complex extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane intracellular anatomical structure cytoplasm cytosol parallel fiber to Purkinje cell synapse excitatory synapse presynapse presynaptic membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection GTPase activator complex enzyme activator complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A [auth E], E [auth C]	Regulator of G-protein signaling 7	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein binding binding G-protein beta-subunit binding G-protein alpha-subunit binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein binding binding G-protein beta-subunit binding G-protein alpha-subunit binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity regulation of postsynaptic membrane potential regulation of biological quality regulation of membrane potential cellular response to stimulus regulation of biological process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity regulation of postsynaptic membrane potential regulation of biological quality regulation of membrane potential cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling G protein-coupled receptor signaling pathway cellular process signal transduction cell communication regulation of signaling negative regulation of signaling negative regulation of response to stimulus negative regulation of biological process regulation of signal transduction negative regulation of signal transduction negative regulation of G protein-coupled receptor signaling pathway negative regulation of cell communication regulation of response to stimulus negative regulation of cellular process regulation of cell communication regulation of G protein-coupled receptor signaling pathway intracellular signal transduction	cellular anatomical structure cell tip cell pole cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane dendrite terminus somatodendritic compartment cellular anatomical structure cell tip cell pole cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane dendrite terminus somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm cytosol presynapse presynaptic membrane glutamatergic synapse membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B]	IPR017978	GPCR family 3, C-terminal	Domain
C [auth A], D [auth B]	IPR043458	G-protein coupled receptor 158/179	Family
C [auth A], D [auth B]	IPR054714	GPR158/179, extracellular domain	Domain
B [auth F], F [auth D]	IPR019775	WD40 repeat, conserved site	Conserved Site
B [auth F], F [auth D]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
B [auth F], F [auth D]	IPR001632	G-protein beta subunit-like, WD40 repeats	Domain
B [auth F], F [auth D]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B [auth F], F [auth D]	IPR016346	G-protein subunit beta 1-5	Family
B [auth F], F [auth D]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B [auth F], F [auth D]	IPR001680	WD40 repeat	Repeat
A [auth E], E [auth C]	IPR016137	RGS domain	Domain
A [auth E], E [auth C]	IPR000591	DEP domain	Domain
A [auth E], E [auth C]	IPR036305	RGS domain superfamily	Homologous Superfamily
A [auth E], E [auth C]	IPR047017	Regulator of G-protein signalling 6/7/9/11, DHEX domain superfamily	Homologous Superfamily
A [auth E], E [auth C]	IPR047016	Regulator of G protein signaling 6/7/9/11	Family
A [auth E], E [auth C]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth E], E [auth C]	IPR044926	RGS, subdomain 2	Homologous Superfamily
A [auth E], E [auth C]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A [auth E], E [auth C]	IPR015898	G-protein, gamma subunit-like domain	Domain
A [auth E], E [auth C]	IPR036284	G-protein gamma-like domain superfamily	Homologous Superfamily
A [auth E], E [auth C]	IPR040759	Regulator of G-protein signalling, DHEX domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A], D [auth B]	Pharos: Q5T848	astrocytic tumor facioscapulohumeral muscular dystrophy intestinal disease malignant ependymoma ovarian cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant glioma Pick disease psoriasis Diverticular Diseases hepatocellular carcinoma lung carcinoma astrocytic tumor facioscapulohumeral muscular dystrophy intestinal disease malignant ependymoma ovarian cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma malignant glioma Pick disease psoriasis Diverticular Diseases hepatocellular carcinoma lung carcinoma medulloblastoma pituitary cancer subependymal giant cell astrocytoma
B [auth F], F [auth D]	Pharos: O14775	gnb5-related intellectual disability-cardiac arrhythmia syndrome language delay and attention deficit-hyperactivity disorder/cognitive impairment with or without cardiac arrhythmia colorectal cancer ovarian cancer pilocytic astrocytoma ulcerative colitis astrocytic tumor colorectal carcinoma glioblastoma intellectual disability lung carcinoma malignant mesothelioma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor gnb5-related intellectual disability-cardiac arrhythmia syndrome language delay and attention deficit-hyperactivity disorder/cognitive impairment with or without cardiac arrhythmia colorectal cancer ovarian cancer pilocytic astrocytoma ulcerative colitis astrocytic tumor colorectal carcinoma glioblastoma intellectual disability lung carcinoma malignant mesothelioma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor atypical teratoid rhabdoid tumor Colorectal Neoplasms malignant ependymoma medulloblastoma osteosarcoma Pick disease subependymal giant cell astrocytoma Crohn disease large cell medulloblastoma malignant glioma non-small cell lung carcinoma
A [auth E], E [auth C]	Pharos: P49802	intellectual disability Parkinson disease pituitary cancer Sjogren syndrome Acute Cerebrovascular Accidents atypical teratoid rhabdoid tumor cystic fibrosis large cell medulloblastoma malignant glioma medulloblastoma oligodendroglioma Pick disease primitive neuroectodermal tumor subependymal giant cell astrocytoma Alzheimer disease intellectual disability Parkinson disease pituitary cancer Sjogren syndrome Acute Cerebrovascular Accidents atypical teratoid rhabdoid tumor cystic fibrosis large cell medulloblastoma malignant glioma medulloblastoma oligodendroglioma Pick disease primitive neuroectodermal tumor subependymal giant cell astrocytoma Alzheimer disease glioblastoma lung carcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma type 2 diabetes mellitus astrocytic tumor cerebrovascular disorder malignant ependymoma maturity-onset diabetes of the young

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth E], B [auth F], C [auth A], D [auth B], E [auth C] A [auth E], B [auth F], C [auth A], D [auth B], E [auth C], F [auth D]	OPM	Transmembrane	Alpha-helical polytopic	Rhodopsin-like receptors and pumps	GPCR Metabotropic glutamate receptor (C) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth E], B [auth F], C [auth A], D [auth B], E [auth C] A [auth E], B [auth F], C [auth A], D [auth B], E [auth C], F [auth D]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth E], B [auth F], C [auth A], D [auth B], E [auth C] A [auth E], B [auth F], C [auth A], D [auth B], E [auth C], F [auth D]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	G Protein-Coupled Receptors: Class C	Orphan GPR158 receptor