7EP2 | pdb_00007ep2

Crystal structure of ZYG11B bound to GGFN degron

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	LbH_EIF2B	e7ep2B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: LbH_EIF2B	ECOD (v294.1)
C [auth D]	LbH_EIF2B	e7ep2D1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: LbH_EIF2B	ECOD (v294.1)
B [auth C]	LbH_EIF2B	e7ep2C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: LbH_EIF2B	ECOD (v294.1)
A	PI3K_C2	e7ep2A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PI3K_C2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth B]	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)
C [auth D]	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)
B [auth C]	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)
A	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth D], D [auth B]	PF22964	Protein zer-1 homolog-like, C-terminal domain (ZER1-like_2nd)	Protein zer-1 homolog-like, C-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth D], D [auth B]	Protein zyg-11 homolog B	-	positive regulation of proteasomal protein catabolic process regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of proteasomal protein catabolic process regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process metabolic process cellular process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process protein quality control for misfolded or incompletely synthesized proteins	cellular anatomical structure intracellular anatomical structure cytoplasm cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul2-RING ubiquitin ligase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth D], D [auth B]	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B]	IPR055142	Protein zer-1 homolog-like, C-terminal domain	Domain
A, B [auth C], C [auth D], D [auth B]	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B]	IPR001611	Leucine-rich repeat	Repeat
A, B [auth C], C [auth D], D [auth B]	IPR056845	Zer-1-like, leucine-rich repeats region	Domain
A, B [auth C], C [auth D], D [auth B]	IPR051341	Zyg-11-related ubiquitin ligase adapter protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth D], D [auth B]	Pharos: Q9C0D3	atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy limb-girdle muscular dystrophy malignant pancreatic neoplasm ovarian cancer Pick disease rheumatoid arthritis cystic fibrosis glioblastoma malignant ependymoma medulloblastoma pancreatic ductal adenocarcinoma pilocytic astrocytoma sinusitis Duchenne muscular dystrophy atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy limb-girdle muscular dystrophy malignant pancreatic neoplasm ovarian cancer Pick disease rheumatoid arthritis cystic fibrosis glioblastoma malignant ependymoma medulloblastoma pancreatic ductal adenocarcinoma pilocytic astrocytoma sinusitis Duchenne muscular dystrophy large cell medulloblastoma malignant glioma osteosarcoma peripheral arterial disease primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.