Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth 4]SCOP2 FamilyMediator of RNA polymerase II transcription subunit 318105986 4005652 SCOP2 (2022-06-29)
AA [auth 4]SCOP2 SuperfamilyMediator of RNA polymerase II transcription subunit 318105987 3002846 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth R]PF09637e7emfR1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: PF09637ECOD (1.6)
P [auth T]PF08612e7emfT1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: PF08612ECOD (1.6)
Q [auth U]PF11221e7emfU1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: RNA polymerase II holoenzyme component SRB7 (MED21)F: PF11221ECOD (1.6)
R [auth V]PF06179e7emfV1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 22 (From Topology)H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)T: Mediator of RNA polymerase II transcription subunit 22F: PF06179ECOD (1.6)
U [auth Y]PF11265e7emfY1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: PF11265ECOD (1.6)
X [auth 1]PF11594e7emf11 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: RNA polymerase II holoenzyme component SRB7 (MED21)F: PF11594ECOD (1.6)
AA [auth 4]PF05669e7emf41 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: PF05669ECOD (1.6)
D [auth F]PF04934e7emfF1 A: extended segmentsX: Mediator of RNA polymerase II transcription subunit 6 (From Topology)H: Mediator of RNA polymerase II transcription subunit 6 (From Topology)T: Mediator of RNA polymerase II transcription subunit 6F: PF04934ECOD (1.6)
E [auth G]PF05983e7emfG1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: MED7 hinge regionF: PF05983ECOD (1.6)
E [auth G]F_UNCLASSIFIEDe7emfG2 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10744Mediator of RNA polymerase II transcription subunit 1 (Med1)Mediator of RNA polymerase II transcription subunit 1Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subu ...Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subunits essential for viability of the whole organism via its role in environmentally-directed cell-fate decisions [1]. Med1 is part of the tail region of the Mediator complex [2].
Domain
J [auth N]PF08638Mediator complex subunit MED14 (Med14)Mediator complex subunit MED14- Family
K [auth O]PF21538ARC105/Med15 mediator subunit central domain (Med15_M)ARC105/Med15 mediator subunit central domainThis domain is found in the Med15 subunit of the ARC-Mediator co-activator complex.Domain
L [auth P]PF20718Mediator complex subunit 16, central helical bridge (Med16_bridge)Mediator complex subunit 16, central helical bridgeMed16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression. This entry represents the central helical bridge domain [1,2].Domain
L [auth P]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
M [auth Q]PF10156Subunit 17 of Mediator complex (Med17)Subunit 17 of Mediator complex- Family
N [auth R]PF09637Med18 protein (Med18)Med18 proteinMed18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ...Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators [1].
Domain
O [auth S]PF10278Mediator of RNA pol II transcription subunit 19 (Med19)Mediator of RNA pol II transcription subunit 19- Family
P [auth T]PF08612TATA-binding related factor (TRF) of subunit 20 of Mediator complex (Med20)TATA-binding related factor (TRF) of subunit 20 of Mediator complex- Family
Q [auth U]PF11221Subunit 21 of Mediator complex (Med21)Subunit 21 of Mediator complex- Family
R [auth V]PF06179Surfeit locus protein 5 subunit 22 of Mediator complex (Med22)Surfeit locus protein 5 subunit 22 of Mediator complex- Family
S [auth W]PF11573Mediator complex subunit 23 (Med23)Mediator complex subunit 23- Family
T [auth X]PF11277Mediator complex subunit 24 N-terminal (Med24_N)Mediator complex subunit 24 N-terminal- Family
U [auth Y]PF11265Mediator complex subunit 25 von Willebrand factor type A (Med25_VWA)Mediator complex subunit 25 von Willebrand factor type A- Family
V [auth Z]PF15693Mediator complex subunit 26 C-terminal (Med26_C)Mediator complex subunit 26 C-terminalMed26_C is the C-terminal domain of subunit 26 of the Mediator complex in eukaryotes. Med19 and Med26 act synergistically to mediate the interaction between REST (a Kruppel-type zinc finger transcription factor that binds to a 21-bp RE1 silencing ele ...Med26_C is the C-terminal domain of subunit 26 of the Mediator complex in eukaryotes. Med19 and Med26 act synergistically to mediate the interaction between REST (a Kruppel-type zinc finger transcription factor that binds to a 21-bp RE1 silencing element present in over 900 human genes) and Mediator [1]. The C-terminal domain is critical and sufficient for its assembly into Mediator and its interaction with Pol II. The most highly conserved C-terminal amino acids are critical for these interactions because deletion of the last eight amino acids from the Med26 C terminus disrupted binding to Mediator and Pol II [2].
Domain
W [auth 0]PF11571Mediator complex subunit 27 (Med27)Mediator complex subunit 27- Family
X [auth 1]PF11594Mediator complex subunit 28 (Med28)Mediator complex subunit 28- Family
Y [auth 2]PF11568Mediator complex subunit 29 (Med29)Mediator complex subunit 29- Family
Z [auth 3]PF11315Mediator complex subunit 30 (Med30)Mediator complex subunit 30Med30 is a metazoan-specific subunit of Mediator, having no homologues in yeasts.Domain
AA [auth 4]PF05669SOH1 (Med31)SOH1- Family
C [auth D]PF10018Vitamin-D-receptor interacting Mediator subunit 4 (Med4)Vitamin-D-receptor interacting Mediator subunit 4- Family
D [auth F]PF04934MED6 mediator sub complex component (Med6)MED6 mediator sub complex component- Family
E [auth G]PF05983MED7 protein (Med7)MED7 protein- Family
F [auth H]PF10232Mediator of RNA polymerase II transcription complex subunit 8 (Med8)Mediator of RNA polymerase II transcription complex subunit 8- Family
G [auth I]PF07544RNA polymerase II transcription mediator complex subunit 9 (Med9)RNA polymerase II transcription mediator complex subunit 9- Family
H [auth J]PF09748Transcription factor subunit Med10 of Mediator complex (Med10)Transcription factor subunit Med10 of Mediator complex- Family
I [auth K]PF10280Mediator complex protein (Med11)Mediator complex protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Mediator of RNA polymerase II transcription subunit 1
J [auth N]Mediator of RNA polymerase II transcription subunit 14
K [auth O]Mediator of RNA polymerase II transcription subunit 15
L [auth P]Isoform 2 of Mediator of RNA polymerase II transcription subunit 16
M [auth Q]Mediator of RNA polymerase II transcription subunit 17
N [auth R]Mediator of RNA polymerase II transcription subunit 18
O [auth S]Mediator of RNA polymerase II transcription subunit 19
P [auth T]Mediator of RNA polymerase II transcription subunit 20
Q [auth U]Mediator of RNA polymerase II transcription subunit 21
R [auth V]Mediator of RNA polymerase II transcription subunit 22
S [auth W]Mediator of RNA polymerase II transcription subunit 23
Unknown Chain (poly A)---
T [auth X]Mediator of RNA polymerase II transcription subunit 24
U [auth Y]Mediator of RNA polymerase II transcription subunit 25
V [auth Z]Mediator of RNA polymerase II transcription subunit 26
W [auth 0]Mediator of RNA polymerase II transcription subunit 27
X [auth 1]Mediator of RNA polymerase II transcription subunit 28
Y [auth 2]Mediator of RNA polymerase II transcription subunit 29
Z [auth 3]Mediator of RNA polymerase II transcription subunit 30
AA [auth 4]Mediator of RNA polymerase II transcription subunit 31
C [auth D]Mediator of RNA polymerase II transcription subunit 4
D [auth F]Mediator of RNA polymerase II transcription subunit 6
E [auth G]Mediator of RNA polymerase II transcription subunit 7
F [auth H]Isoform 2 of Mediator of RNA polymerase II transcription subunit 8
G [auth I]Mediator of RNA polymerase II transcription subunit 9
H [auth J]Mediator of RNA polymerase II transcription subunit 10
I [auth K]Mediator of RNA polymerase II transcription subunit 11

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019680Mediator complex, subunit Med1Domain
J [auth N]IPR013947Mediator complex, subunit Med14Family
K [auth O]IPR036529Coactivator CBP, KIX domain superfamilyHomologous Superfamily
K [auth O]IPR048386ARC105/Med15 mediator subunit, C-terminal domainDomain
K [auth O]IPR048385ARC105/Med15 mediator subunit, central domainDomain
K [auth O]IPR019087Mediator of RNA polymerase II transcription subunit 15, N-terminalDomain
L [auth P]IPR048616Mediator of RNA polymerase II transcription subunit 16 , central helical bridgeDomain
L [auth P]IPR048338Mediator complex, subunit Med16Family
L [auth P]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth P]IPR001680WD40 repeatRepeat
L [auth P]IPR048339Mediator complex subunit 16, C-terminalDomain
L [auth P]IPR011041Soluble quinoprotein glucose/sorbosone dehydrogenaseHomologous Superfamily
L [auth P]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth P]IPR021665Mediator complex, subunit Med16, N-terminalDomain
M [auth Q]IPR019313Mediator complex, subunit Med17Family
N [auth R]IPR019095Mediator complex, subunit Med18Family
O [auth S]IPR019403Mediator complex, subunit Med19, metazoaFamily
P [auth T]IPR013921Mediator complex, subunit Med20Family
Q [auth U]IPR037212Mediator complex, subunit Med7/Med21-likeHomologous Superfamily
Q [auth U]IPR021384Mediator complex, subunit Med21Family
R [auth V]IPR009332Mediator of RNA polymerase II transcription subunit 22Family
S [auth W]IPR021629Mediator complex, subunit Med23Family
T [auth X]IPR021429Mediator complex, subunit Med24,Family
U [auth Y]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
U [auth Y]IPR021397Mediator complex, subunit Med25, synapsin 1Domain
U [auth Y]IPR021419Mediator of RNA polymerase II transcription subunit 25, von Willebrand factor type A domainDomain
U [auth Y]IPR038196Mediator complex subunit 25, PTOV domain superfamilyHomologous Superfamily
U [auth Y]IPR021394Mediator complex, subunit Med25, PTOV domainDomain
V [auth Z]IPR042376Mediator of RNA polymerase II transcription subunit 26Family
V [auth Z]IPR035441TFIIS/LEDGF domain superfamilyHomologous Superfamily
V [auth Z]IPR031417Mediator complex subunit 26, middle domainDomain
V [auth Z]IPR017923Transcription factor IIS, N-terminalDomain
V [auth Z]IPR031416Mediator complex subunit 26, C-terminal domainDomain
V [auth Z]IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeDomain
W [auth 0]IPR021627Mediator complex, subunit Med27Family
X [auth 1]IPR021640Mediator complex, subunit Med28Family
Y [auth 2]IPR021018Mediator complex, subunit Med29, metazoaFamily
Z [auth 3]IPR021019Mediator complex, subunit Med30, metazoaFamily
AA [auth 4]IPR008831Mediator complex, subunit Med31Family
AA [auth 4]IPR038089Mediator of RNA polymerase II, subunit Med31 superfamilyHomologous Superfamily
C [auth D]IPR019258Mediator complex, subunit Med4Family
D [auth F]IPR016820Mediator complex, subunit Med6, metazoa/plantFamily
D [auth F]IPR007018Mediator complex, subunit Med6Family
D [auth F]IPR038566Mediator complex, subunit Med6 superfamilyHomologous Superfamily
E [auth G]IPR037212Mediator complex, subunit Med7/Med21-likeHomologous Superfamily
E [auth G]IPR009244Mediator complex, subunit Med7Family
E [auth G]IPR044888Mediator complex, subunit Med7 superfmailyHomologous Superfamily
F [auth H]IPR019364Mediator complex, subunit Med8, fungi/metazoaFamily
G [auth I]IPR037212Mediator complex, subunit Med7/Med21-likeHomologous Superfamily
G [auth I]IPR011425Mediator of RNA polymerase II transcription subunit 9Family
G [auth I]IPR039242Mediator of RNA polymerase II transcription subunit 9, metazoanFamily
H [auth J]IPR019145Mediator complex, subunit Med10Family
I [auth K]IPR019404Mediator complex, subunit Med11Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ15648
J [auth N]PharosO60244
K [auth O]PharosQ96RN5
L [auth P]PharosQ9Y2X0
M [auth Q]PharosQ9NVC6
N [auth R]PharosQ9BUE0
O [auth S]PharosA0JLT2
P [auth T]PharosQ9H944
Q [auth U]PharosQ13503
R [auth V]PharosQ15528
S [auth W]PharosQ9ULK4
T [auth X]PharosO75448
U [auth Y]PharosQ71SY5
V [auth Z]PharosO95402
W [auth 0]PharosQ6P2C8
X [auth 1]PharosQ9H204
Y [auth 2]PharosQ9NX70
Z [auth 3]PharosQ96HR3
AA [auth 4]PharosQ9Y3C7
C [auth D]PharosQ9NPJ6
D [auth F]PharosO75586
E [auth G]PharosO43513
F [auth H]PharosQ96G25
H [auth J]PharosQ9BTT4
I [auth K]PharosQ9P086