7EC1 | pdb_00007ec1

Crystal structure of SdgB (ligand-free form)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRing_hydroxyl_Be7ec1B3 A: beta meandersX: O-GlcNAc transferase GtfA beta-meander domain (From Topology)H: O-GlcNAc transferase GtfA beta-meander domain (From Topology)T: O-GlcNAc transferase GtfA beta-meander domainF: Ring_hydroxyl_BECOD (1.6)
BGlycos_transf_1e7ec1B2 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glycos_transf_1ECOD (1.6)
BTIGR02918_1ste7ec1B1 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: TIGR02918_1stECOD (1.6)
ARing_hydroxyl_Be7ec1A3 A: beta meandersX: O-GlcNAc transferase GtfA beta-meander domain (From Topology)H: O-GlcNAc transferase GtfA beta-meander domain (From Topology)T: O-GlcNAc transferase GtfA beta-meander domainF: Ring_hydroxyl_BECOD (1.6)
AGlycos_transf_1e7ec1A1 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: Glycos_transf_1ECOD (1.6)
ATIGR02918_1ste7ec1A2 A: a/b three-layered sandwichesX: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)T: UDP-Glycosyltransferase/glycogen phosphorylaseF: TIGR02918_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (utative)
A3.40.50.2000 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glycogen Phosphorylase BCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00534Glycosyl transferases group 1 (Glycos_transf_1)Glycosyl transferases group 1Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members o ...Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Glycosyl transferase, group 1 family protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001296Glycosyl transferase, family 1Domain