Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
G [auth E]d7e8ie_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
C [auth A]d7e8ia_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
D [auth B]d7e8ib_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
H [auth F]d7e8if_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
E [auth C]d7e8ic_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
I [auth G]d7e8ig_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
F [auth D]d7e8id_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2B African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
J [auth H]d7e8ih_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2B African clawed frog (Xenopus laevis ) [TaxId: 8355 ], SCOPe (2.08)
Ld7e8il_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth E]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBRCT domain-like8091657 3000159 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyAnkyrin repeat8057709 3000154 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyBRCT domain-like8004132 3000159 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyUbiquitin-like8101457 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth E]Histonee7e8iE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
C [auth A]Histonee7e8iA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
D [auth B]Histone_1e7e8iB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
H [auth F]Histone_1e7e8iF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
E [auth C]Histone_1e7e8iC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
I [auth G]Histone_1e7e8iG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
F [auth D]Histonee7e8iD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
J [auth H]Histonee7e8iH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
KAnk_2e7e8iK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: Ank_2ECOD (1.6)
KPTCB-BRCTe7e8iK3 A: a/b three-layered sandwichesX: BRCT domain (From Topology)H: BRCT domain (From Topology)T: BRCT domainF: PTCB-BRCTECOD (1.6)
Lubiquitin_1e7e8iL1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A],
G [auth E]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D [auth B],
H [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
E [auth C],
I [auth G]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
E [auth C],
I [auth G]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
F [auth D],
J [auth H]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF00023Ankyrin repeat (Ank)Ankyrin repeat- Repeat
PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domain- Family
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth J]DNA (145-MER)---
B [auth I]DNA (145-MER)---
C [auth A],
G [auth E]
Histone H3 -
D [auth B],
H [auth F]
Histone H4 -
E [auth C],
I [auth G]
Histone H2A -
F [auth D],
J [auth H]
Histone H2B 1.1 -
BRCA1-associated RING domain protein 1
Polyubiquitin-B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A],
G [auth E]
IPR009072Histone-foldHomologous Superfamily
C [auth A],
G [auth E]
IPR007125Histone H2A/H2B/H3Domain
C [auth A],
G [auth E]
IPR000164Histone H3/CENP-AFamily
D [auth B],
H [auth F]
IPR009072Histone-foldHomologous Superfamily
D [auth B],
H [auth F]
IPR001951Histone H4Family
D [auth B],
H [auth F]
IPR035425CENP-T/Histone H4, histone foldDomain
D [auth B],
H [auth F]
IPR019809Histone H4, conserved siteConserved Site
D [auth B],
H [auth F]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
E [auth C],
I [auth G]
IPR009072Histone-foldHomologous Superfamily
E [auth C],
I [auth G]
IPR007125Histone H2A/H2B/H3Domain
E [auth C],
I [auth G]
IPR002119Histone H2AFamily
E [auth C],
I [auth G]
IPR032454Histone H2A, C-terminal domainDomain
E [auth C],
I [auth G]
IPR032458Histone H2A conserved siteConserved Site
F [auth D],
J [auth H]
IPR009072Histone-foldHomologous Superfamily
F [auth D],
J [auth H]
IPR007125Histone H2A/H2B/H3Domain
F [auth D],
J [auth H]
IPR000558Histone H2BFamily
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
IPR039503BARD1, Zinc finger, RING-typeDomain
IPR001357BRCT domainDomain
IPR036420BRCT domain superfamilyHomologous Superfamily
IPR002110Ankyrin repeatRepeat
IPR017907Zinc finger, RING-type, conserved siteConserved Site
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR001841Zinc finger, RING-typeDomain
IPR019954Ubiquitin conserved siteConserved Site
IPR000626Ubiquitin-like domainDomain
IPR019956Ubiquitin domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily