7E2D | pdb_00007e2d

Monomer of TRAPPII (Closed)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HSedlin_Ne7e2dH1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Sedlin_NECOD (1.6)
ESybindine7e2dE1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
DSybindine7e2dD1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
FTRAPPe7e2dF1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
B [auth C]TRAPPe7e2dC1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
KF_UNCLASSIFIEDe7e2dK1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
ASedlin_Ne7e2dA1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Sedlin_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF26254Trs120/TRAPPC9, first Ig-like domain (Ig_TRAPPC9-Trs120_1st)Trs120/TRAPPC9, first Ig-like domainThis domain is found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183) and in human Trafficking protein particle complex subunit 9 (TRAPPC9). It is predicted to have an Ig-like fold. Trs120 is a subunit of the multiprotei ...This domain is found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183) and in human Trafficking protein particle complex subunit 9 (TRAPPC9). It is predicted to have an Ig-like fold. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
PF26251Trs120/TRAPPC9 TPR (TPR_TRAPPC9-Trs120)Trs120/TRAPPC9 TPR- Repeat
PF26283Trs120/TRAPPC9, fourth Ig-like domain (Ig_TRAPPC9-Trs120_4th)Trs120/TRAPPC9, fourth Ig-like domainThis entry represents the fourth Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of t ...This entry represents the fourth Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
PF26282Trs120/TRAPPC9, third Ig-like domain (Ig_TRAPPC9-Trs120_3rd)Trs120/TRAPPC9, third Ig-like domainThis entry represents the third Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of th ...This entry represents the third Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
PF12584Trafficking protein particle complex subunit 10, TRAPPC10 (TRAPPC10)Trafficking protein particle complex subunit 10, TRAPPC10- Family
PF24967TR130 NTS domain (NTS_TR130)TR130 NTS domain- Repeat
PF24966TR130 second Ig-like domain (Ig_TR130_2nd)TR130 second Ig-like domainThis domain is found in the yeast Trafficking protein particle complex II-specific subunit 130 (TR130) and related proteins. TRS130 plays a role in the YPT GEF activity of TRAPP II in concert with the two other TRAPP II-specific subunits TRS65 and TR ...This domain is found in the yeast Trafficking protein particle complex II-specific subunit 130 (TR130) and related proteins. TRS130 plays a role in the YPT GEF activity of TRAPP II in concert with the two other TRAPP II-specific subunits TRS65 and TRS120. This protein contains four Ig-like domains arranged in tandem [1]. This entry represents the second of these domains.
Domain
PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family
PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
C [auth B]PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
B [auth C],
F		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Trafficking protein particle complex II-specific subunit 120-
Trafficking protein particle complex II-specific subunit 130-
Trafficking protein particle complex subunit 20-
Trafficking protein particle complex subunit 31-
Trafficking protein particle complex subunit 23-
Trafficking protein particle complex subunit BET5-
C [auth B]Trafficking protein particle complex subunit 33-
B [auth C],
F		Trafficking protein particle complex subunit BET3-
Trafficking protein particle complex II-specific subunit 65-
TRAPP-associated protein TCA17-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013935Trs120/TRAPPC9Family
IPR056915Trs130, second Ig-like domainDomain
IPR022233TRAPPC10/Trs130, C-terminalDomain
IPR056916Trs130, NTS domainDomain
IPR045126Trafficking protein particle complex subunit TRAPPC10/Trs130Family
IPR056913TRAPPC10/Trs130, N-terminalDomain
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR006722Trafficking protein particle complex subunit 2Family
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
IPR016696TRAPP I complex, subunit 5Family
IPR007194Transport protein particle (TRAPP) componentFamily
IPR007233Trafficking protein particle complex subunitFamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR007233Trafficking protein particle complex subunitFamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
C [auth B]IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
C [auth B]IPR007194Transport protein particle (TRAPP) componentFamily
C [auth B]IPR037992TRAPP complex, Trs33 subunitFamily
B [auth C],
F		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
B [auth C],
F		IPR007194Transport protein particle (TRAPP) componentFamily
B [auth C],
F		IPR016721Bet3 familyFamily
IPR055426Trafficking protein particle complex II-specific subunit 65, IgD2Domain
IPR024662Trafficking protein particle complex II-specific subunit 65Family
IPR055425Trafficking protein particle complex II-specific subunit 65, IgD1Domain
IPR055420Trafficking protein particle complex II-specific subunit 65, IgD3Domain
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR006722Trafficking protein particle complex subunit 2Family