Annotations: 7DYD

Crystal structure of MERS-CoV N-NTD complexed with ligand P4-2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
B	SCOP2 Family	SARS coronavirus nucleoprotein RNA-binding domain-like	8106049	4001881	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8106050	3000498	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Sybindin	e7dydD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Sybindin	ECOD (v295.2)
C	Sybindin	e7dydC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Sybindin	ECOD (v295.2)
B	Sybindin	e7dydB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Sybindin	ECOD (v295.2)
A	Hemagglutinin	e7dydA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Hemagglutinin	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00937	Coronavirus nucleocapsid (CoV_nucleocap)	Coronavirus nucleocapsid	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleoprotein	RNA binding binding nucleic acid binding	virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging	host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell Golgi apparatus viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell Golgi apparatus viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001218	Nucleocapsid protein, coronavirus	Family
A, B, C, D	IPR044344	Nucleocapsid (N) protein, C-terminal domain, coronavirus	Domain
A, B, C, D	IPR037195	Nucleocapsid protein, N-terminal	Homologous Superfamily
A, B, C, D	IPR037179	Nucleocapsid protein, C-terminal	Homologous Superfamily
A, B, C, D	IPR043505	Nucleocapsid protein, betacoronavirus	Family
A, B, C, D	IPR044345	Nucleocapsid (N) protein, N-terminal domain, coronavirus	Domain