7DV5 | pdb_00007dv5

Human bile salt exporter ABCB11 in complex with taurocholate

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth U]		e7dv5U01	A: alpha bundles	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth U]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth U]	PF00664	ABC transporter transmembrane region (ABC_membrane)	ABC transporter transmembrane region	-	Family
A [auth U]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth U]	Bile salt export pump	canalicular bile acid transmembrane transporter activity lipid transporter activity lipid transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity transmembrane transporter activity bile acid transmembrane transporter activity xenobiotic transmembrane transporter activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ABC-type xenobiotic transporter activity canalicular bile acid transmembrane transporter activity lipid transporter activity lipid transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity transmembrane transporter activity bile acid transmembrane transporter activity xenobiotic transmembrane transporter activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ABC-type xenobiotic transporter activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ATPase-coupled carboxylic acid transmembrane transporter activity ATPase-coupled monocarboxylic acid transmembrane transporter activity ATPase-coupled lipid transmembrane transporter activity ABC-type bile acid transporter activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	regulation of localization regulation of biological process bile acid secretion organic anion transport carboxylic acid transport regulation of transport transport secretion positive regulation of bile acid secretion biological regulation positive regulation of biological process acid secretion establishment of localization regulation of secretion positive regulation of organic acid transport regulation of localization regulation of biological process bile acid secretion organic anion transport carboxylic acid transport regulation of transport transport secretion positive regulation of bile acid secretion biological regulation positive regulation of biological process acid secretion establishment of localization regulation of secretion positive regulation of organic acid transport organic acid transport localization monocarboxylic acid transport positive regulation of secretion positive regulation of transport regulation of bile acid secretion regulation of organic acid transport phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis oxoacid metabolic process steroid metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process bile acid metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process sterol homeostasis cholesterol homeostasis protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal transmembrane transport xenobiotic transmembrane transport xenobiotic transport lipid localization bile acid and bile salt transport lipid transport organic hydroxy compound transport macromolecule localization catabolic process regulation of cellular process ketone metabolic process regulation of lipid metabolic process organic acid catabolic process regulation of primary metabolic process regulation of fatty acid oxidation monocarboxylic acid catabolic process fatty acid oxidation regulation of small molecule metabolic process carboxylic acid catabolic process fatty acid beta-oxidation lipid oxidation fatty acid metabolic process lipid catabolic process regulation of fatty acid beta-oxidation lipid modification regulation of catabolic process regulation of lipid catabolic process regulation of ketone metabolic process fatty acid catabolic process regulation of fatty acid metabolic process small molecule catabolic process regulation of metabolic process xenobiotic export from cell export from cell bile acid biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process cellular response to stimulus cellular response to chemical stimulus response to stimulus response to chemical cellular response to xenobiotic stimulus xenobiotic metabolic process response to xenobiotic stimulus canalicular bile acid transport	cell-cell junction intercellular canaliculus cellular anatomical structure anchoring junction cell junction cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle cell-cell junction intercellular canaliculus cellular anatomical structure anchoring junction cell junction cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell surface endosome membrane intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle recycling endosome endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle recycling endosome membrane vesicle membrane cytoplasmic vesicle cytoplasm organelle membrane intracellular canaliculus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth U]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A [auth U]	IPR003593	AAA+ ATPase domain	Domain
A [auth U]	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A [auth U]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth U]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A [auth U]	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily
A [auth U]	IPR039421	Type 1 protein exporter	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth U]	Pharos: O95342	intrahepatic cholestasis cholestasis progressive familial intrahepatic cholestasis type 2 benign recurrent intrahepatic cholestasis type 2 progressive familial intrahepatic cholestasis Pruritus progressive familial intrahepatic cholestasis type 1 metabolic syndrome X colorectal cancer congenital afibrinogenemia mucocutaneous lymph node syndrome sickle cell anemia colorectal carcinoma malignant ependymoma peripheral nervous system disease intrahepatic cholestasis cholestasis progressive familial intrahepatic cholestasis type 2 benign recurrent intrahepatic cholestasis type 2 progressive familial intrahepatic cholestasis Pruritus progressive familial intrahepatic cholestasis type 1 metabolic syndrome X colorectal cancer congenital afibrinogenemia mucocutaneous lymph node syndrome sickle cell anemia colorectal carcinoma malignant ependymoma peripheral nervous system disease rheumatoid arthritis benign recurrent intrahepatic cholestasis type 2 diabetes mellitus dry eye syndrome intellectual disability peripheral neuropathy ulcerative colitis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth U]	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	Multidrug resistance exporter (MDR)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth U]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth U]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth U]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	Bile salt exporter ABCB11 with two taurocholates bound

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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