Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ion_trans, Ion_trans_2 | e7dreA1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: Ion_trans, Ion_trans_2 | ECOD (v294.1) |
| C | Ion_trans, Ion_trans_2 | e7dreC1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: Ion_trans, Ion_trans_2 | ECOD (v294.1) |
| G | Ion_trans, Ion_trans_2 | e7dreG1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: Ion_trans, Ion_trans_2 | ECOD (v294.1) |
| E | Ion_trans, Ion_trans_2 | e7dreE1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: Ion_trans, Ion_trans_2 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
| C | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
| G | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
| E | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF19906 | C-glycoside deglycosidase beta subunit (CGDB) | C-glycoside deglycosidase beta subunit | This is the structural domain of C-glycoside deglycosidase beta subunit (CGDB, also known as CarC), a carbon-carbon bond-cleaving enzyme which participates in the metabolism of C-glycosides [1]. It acts on the C6-glycosylated compounds 3''-dehydroiso ... | Domain | |
| PF01261 | Xylose isomerase-like TIM barrel (AP_endonuc_2) | Xylose isomerase-like TIM barrel | This TIM alpha/beta barrel structure is found in xylose isomerase (Swiss:P19148) and in endonuclease IV (Swiss:P12638, EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| DfgB | - | - | ||
| Sugar phosphate isomerase/epimerase | - | - |














