7DR0 | pdb_00007dr0

Structure of Wild-type PSI monomer1 from Cyanophora paradoxa


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8106470 4002118 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8106471 3000850 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8106555 3000850 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8106553 3000020 SCOP2B (2022-06-29)
G [auth I]SCOP2 FamilySubunit VIII of photosystem I reaction centre, PsaI 8106560 4002098 SCOP2 (2022-06-29)
G [auth I]SCOP2 SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8106561 3000819 SCOP2 (2022-06-29)
H [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8106563 3000824 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8106559 3000813 SCOP2B (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE) 8106556 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins 8106557 3000325 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8106639 3000951 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8106565 3000829 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGST_Ce7dr0A1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
BGST_Ce7dr0B1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
CGST_Ce7dr0C1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
G [auth I]GST_Ce7dr0I1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
H [auth J]GST_Ce7dr0J1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
I [auth K]CoV_NSP8e7dr0K1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (develop294)
FGST_Ce7dr0F1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
EGST_Ce7dr0E1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
DGST_Ce7dr0D1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
K [auth M]GST_Ce7dr0M1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)
J [auth L]GST_Ce7dr0L1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J [auth L]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
G [auth I]Photosystem I reaction center subunit VIII-
H [auth J]Photosystem I reaction center subunit IX-
I [auth K]Photosystem I reaction center subunit PsaK 1---
Photosystem I reaction center subunit III-
Photosystem I reaction center subunit IV-
Photosystem I reaction center subunit II, cyanelle-
K [auth M]Photosystem I reaction center subunit XII-
J [auth L]Photosystem I reaction center subunit XI---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006243Photosystem I PsaAFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
G [auth I]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
G [auth I]IPR001302Photosystem I reaction centre subunit VIIIFamily
H [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
H [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
K [auth M]IPR010010Photosystem I PsaM, reaction centreFamily
K [auth M]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicPhotosystemsPhotosystem I

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage