7DNH
2-fold subparticles refinement of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of 2H3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Group I dsDNA viruses | 8071416 | 3000939 | SCOP2B (2021-05-27) |
B [auth A] | SCOP2B Superfamily | Group I dsDNA viruses | 8071416 | 3000939 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Group I dsDNA viruses | 8071416 | 3000939 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8071416 | 3000939 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8071416 | 3000939 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00500 | e7dnhB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
B [auth A] | PF00500 | e7dnhA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
C | PF00500 | e7dnhC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
D | PF00500 | e7dnhD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
E | PF00500 | e7dnhE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
F [auth L] | PF07654 | e7dnhL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth L] | PF07686 | e7dnhL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth H] | PF07654 | e7dnhH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G [auth H] | PF07686 | e7dnhH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
F [auth L] | Fab 2H3 | L-KAPPA | Mus musculus (house mouse) | IGKV12-46*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202423-0) |
G [auth H] | Fab 2H3 | VH-CH1 | Mus musculus (house mouse) | IGHV1-80*01, IGHJ3*01, IGHG1*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202423-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth L] | Light Chain | IGKV12 | Kappa | major capsid protein l1 | major capsid protein l1 | SAbDab (2024-06-14) |
G [auth H] | Heavy Chain | IGHV1 | - | major capsid protein l1 | major capsid protein l1 | SAbDab (2024-06-14) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D, E | PF00500 | L1 (late) protein (Late_protein_L1) | L1 (late) protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D, E | IPR036973 | Major capsid L1 (late) superfamily, Papillomavirus | Homologous Superfamily |
A [auth B], B [auth A], C, D, E | IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily |
A [auth B], B [auth A], C, D, E | IPR002210 | Major capsid L1 (late) protein, Papillomavirus | Family |