7DDE | pdb_00007dde

Cryo-EM structure of the Ape4 and Nbr1 complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth X]Peptidase_M18_2nde7ddeX2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
L [auth X]Peptidase_M18_1ste7ddeX1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
L [auth X]ZZe7ddeX3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
K [auth V]Peptidase_M18_2nde7ddeV2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
K [auth V]Peptidase_M18_1ste7ddeV1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
K [auth V]ZZe7ddeV3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
J [auth S]Peptidase_M18_2nde7ddeS2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
J [auth S]Peptidase_M18_1ste7ddeS1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
J [auth S]ZZe7ddeS3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
I [auth Q]Peptidase_M18_2nde7ddeQ2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
I [auth Q]Peptidase_M18_1ste7ddeQ1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
I [auth Q]ZZe7ddeQ3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
H [auth O]Peptidase_M18_2nde7ddeO2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
H [auth O]Peptidase_M18_1ste7ddeO1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
H [auth O]ZZe7ddeO3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
G [auth M]Peptidase_M18_2nde7ddeM2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
G [auth M]Peptidase_M18_1ste7ddeM1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
G [auth M]ZZe7ddeM3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
F [auth K]Peptidase_M18_2nde7ddeK2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
F [auth K]Peptidase_M18_1ste7ddeK1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
F [auth K]ZZe7ddeK3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
E [auth I]Peptidase_M18_2nde7ddeI2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
E [auth I]Peptidase_M18_1ste7ddeI1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
E [auth I]ZZe7ddeI3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
D [auth G]Peptidase_M18_2nde7ddeG2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
D [auth G]Peptidase_M18_1ste7ddeG1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
D [auth G]ZZe7ddeG3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
C [auth E]Peptidase_M18_2nde7ddeE2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
C [auth E]Peptidase_M18_1ste7ddeE1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
C [auth E]ZZe7ddeE3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
B [auth C]Peptidase_M18_2nde7ddeC2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
B [auth C]Peptidase_M18_1ste7ddeC1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
B [auth C]ZZe7ddeC3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)
APeptidase_M18_2nde7ddeA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Peptidase_M18_2ndECOD (1.6)
APeptidase_M18_1ste7ddeA1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: Peptidase_M18_1stECOD (1.6)
AZZe7ddeA3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: ZZECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR023358Peptidase M18, domain 2Homologous Superfamily
IPR001948Peptidase M18Family
IPR006061Solute-binding family 1, conserved siteConserved Site
IPR006060Maltose/Cyclodextrin ABC transporter, substrate-binding proteinFamily
IPR006059Bacterial-type extracellular solute-binding proteinFamily
IPR043145Zinc finger, ZZ-type superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR000433Zinc finger, ZZ-typeDomain
IPR032350Nbr1, FW domainDomain