7CUX | pdb_00007cux

Crystal structure of human Schlafen 5 N'-terminal domain (SLFN5-N) involved in ssRNA cleaving and DNA binding

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	F_UNCLASSIFIED	e7cuxF1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
F	AlbA_2	e7cuxF2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)
E	F_UNCLASSIFIED	e7cuxE1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
E	AlbA_2	e7cuxE2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)
D	F_UNCLASSIFIED	e7cuxD1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
D	AlbA_2	e7cuxD2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)
C	F_UNCLASSIFIED	e7cuxC1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
C	AlbA_2	e7cuxC2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)
B	F_UNCLASSIFIED	e7cuxB1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
B	AlbA_2	e7cuxB2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)
A	F_UNCLASSIFIED	e7cuxA1	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: F_UNCLASSIFIED	ECOD (1.6)
A	AlbA_2	e7cuxA2	A: a+b two layers	X: IF3-like	H: Schlafen 8 (From Topology)	T: Schlafen 8	F: AlbA_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF17057	Poxviridae B3 protein (B3R)	Poxviridae B3 protein	-	Family
A, B, C, D, E A, B, C, D, E, F	PF04326	Schlafen, AlbA_2 (SLFN_AlbA_2)	Schlafen, AlbA_2	This is the AlbA_2 domain from the Schlafen (SLFN) family of proteins which are important in cell differentiation and defense against viruses [1,2]. This domain is present at the N-terminal of all SLFN proteins and includes the SLFN box, a sequence u ...	This is the AlbA_2 domain from the Schlafen (SLFN) family of proteins which are important in cell differentiation and defense against viruses [1,2]. This domain is present at the N-terminal of all SLFN proteins and includes the SLFN box, a sequence unique to these proteins that may form a dimer interface [1]. The AlbA_2 domain is RNA-binding and RNase region as it contains the highly conserved catalytic glutamic acid residues [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Schlafen family member 5	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	developmental process cellular developmental process cell differentiation cellular process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR031450	Poxin-Schlafen/Schlafen-like, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR029684	Schlafen family	Family
A, B, C, D, E A, B, C, D, E, F	IPR007421	Schlafen, AlbA_2 domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR048729	Schlafen, GTPase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038461	Schlafen, AlbA_2 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q08AF3	atypical teratoid rhabdoid tumor hepatocellular carcinoma malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma sarcoidosis tuberculosis cystic fibrosis juvenile dermatomyositis malignant glioma osteosarcoma Pick disease Sjogren syndrome ulcerative colitis glioblastoma atypical teratoid rhabdoid tumor hepatocellular carcinoma malignant ependymoma oligodendroglioma pancreatic ductal adenocarcinoma sarcoidosis tuberculosis cystic fibrosis juvenile dermatomyositis malignant glioma osteosarcoma Pick disease Sjogren syndrome ulcerative colitis glioblastoma lung carcinoma myopathy ovarian cancer psoriasis subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.