7CEC
Structure of alpha6beta1 integrin in complex with laminin-511
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08441 | e7cecA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08441 | ECOD (1.6) |
A | PF01839 | e7cecA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF01839 | ECOD (1.6) |
B | F_UNCLASSIFIED | e7cecB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00362 | e7cecB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF00362 | ECOD (1.6) |
B | PF17205 | e7cecB1 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PF17205 | ECOD (1.6) |
C | PF00054 | e7cecC1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF00054 | ECOD (1.6) |
C | PF02210 | e7cecC3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF02210 | ECOD (1.6) |
G | PF07686,PF11629 | e7cecG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686,PF11629 | ECOD (1.6) |
H | PF07686 | e7cecH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I | PF07686,PF11629 | e7cecI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686,PF11629 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV5 | - | integrin beta-1 | SAbDab (2024-04-26) | |
Light Chain | IGKV4 | Kappa | integrin beta-1 | SAbDab (2024-04-26) | |
Heavy Chain | IGHV8 | - | integrin beta-1 | SAbDab (2024-04-26) | |
Light Chain | IGKV4 | Kappa | integrin beta-1 | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01839 | FG-GAP repeat (FG-GAP) | FG-GAP repeat | - | Repeat | |
PF08441 | Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1) | Integrin alpha Ig-like domain 1 | This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. | Domain | |
PF17205 | Integrin plexin domain (PSI_integrin) | Integrin plexin domain | This short disulphide rich domain is found at the N-terminus of integrin beta chains. | Domain | |
PF00362 | Integrin beta chain VWA domain (Integrin_beta) | Integrin beta chain VWA domain | Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. | Domain | |
PF02210 | Laminin G domain (Laminin_G_2) | Laminin G domain | This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. | Domain | |
PF06009 | Laminin Domain II (Laminin_II) | Laminin Domain II | - | Coiled-coil | |
PF11629 | C terminal SARAH domain of Mst1 (Mst1_SARAH) | C terminal SARAH domain of Mst1 | - | Family | |
PF11629 | C terminal SARAH domain of Mst1 (Mst1_SARAH) | C terminal SARAH domain of Mst1 | - | Family | |