7CE9 | pdb_00007ce9

PQQ-soaked Apo-methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d7ce9p_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
O	d7ce9o_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
L	d7ce9l_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
K	d7ce9k_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
J	d7ce9j_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
I	d7ce9i_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
F	d7ce9f_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
E	d7ce9e_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
N	d7ce9n_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
M	d7ce9m_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
H	d7ce9h_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
G	d7ce9g_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
D	d7ce9d_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
C	d7ce9c_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
B	d7ce9b_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
A	d7ce9a_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	MDH	e7ce9P1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
O	MDH	e7ce9O1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
L	MDH	e7ce9L1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
K	MDH	e7ce9K1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
J	MDH	e7ce9J1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
I	MDH	e7ce9I1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
F	MDH	e7ce9F1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
E	MDH	e7ce9E1	A: extended segments	X: Methanol dehydrogenase subunit (From Topology)	H: Methanol dehydrogenase subunit (From Topology)	T: Methanol dehydrogenase subunit	F: MDH	ECOD (1.6)
N	PQQ_2	e7ce9N1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
M	PQQ_2	e7ce9M1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
H	PQQ_2	e7ce9H1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
G	PQQ_2	e7ce9G1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
D	PQQ_2	e7ce9D1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
C	PQQ_2	e7ce9C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
B	PQQ_2	e7ce9B1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
A	PQQ_2	e7ce9A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F, I, J, K E, F, I, J, K, L, O, P	PF02315	Methanol dehydrogenase beta subunit (MDH)	Methanol dehydrogenase beta subunit	Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidises methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.	Domain
A, B, C, D, G A, B, C, D, G, H, M, N	PF13360	Outer membrane protein assembly factor BamB (PQQ_2)	Outer membrane protein assembly factor BamB	-	Repeat
A, B, C, D, G A, B, C, D, G, H, M, N	PF01011	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain (PQQ)	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, I, J, K E, F, I, J, K, L, O, P	Methanol dehydrogenase [cytochrome c] subunit 2	alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NAD+) activity catalytic activity oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor alcohol dehydrogenase (cytochrome c(L)) activity	methanol oxidation alcohol metabolic process small molecule metabolic process metabolic process cellular process methanol metabolic process primary alcohol metabolic process	-
A, B, C, D, G A, B, C, D, G, H, M, N	Methanol dehydrogenase protein, large subunit	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding heterocyclic compound binding pyrroloquinoline quinone binding	-	cellular anatomical structure membrane outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, I, J, K E, F, I, J, K, L, O, P	IPR036557	Methanol dehydrogenase, beta subunit superfamily	Homologous Superfamily
E, F, I, J, K E, F, I, J, K, L, O, P	IPR003420	Methanol dehydrogenase, beta subunit	Family
A, B, C, D, G A, B, C, D, G, H, M, N	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A, B, C, D, G A, B, C, D, G, H, M, N	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B, C, D, G A, B, C, D, G, H, M, N	IPR001479	Quinoprotein dehydrogenase, conserved site	Conserved Site
A, B, C, D, G A, B, C, D, G, H, M, N	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A, B, C, D, G A, B, C, D, G, H, M, N	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.