7CBP | pdb_00007cbp

CryoEM structure of Zika virus with Fab at 4.1 Angstrom


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth K]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
E [auth N]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)
D [auth Q]SCOP2B SuperfamilyE set domains 8073018 3000070 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth V]C1-sete7cbpV1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
B [auth U]C1-sete7cbpU1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
A [auth T]C1-sete7cbpT1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
G [auth D]C1-sete7cbpD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
I [auth R]C1-sete7cbpR1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
J [auth S]C1-sete7cbpS1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
H [auth E]C1-sete7cbpE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
F [auth K]C1-sete7cbpK1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
E [auth N]C1-sete7cbpN1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
D [auth Q]C1-sete7cbpQ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
G [auth D],
I [auth R]
INN name VH-CH1 Homo sapiens (human) IGHV3-23*01, IGHV3-23D*01, IGHJ3*02, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202614-0)
H [auth E],
J [auth S]
INN name L-KAPPA Homo sapiens (human) IGKV3-11*01, IGKJ2*03, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202614-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G [auth D],
I [auth R]
Heavy ChainIGHV3 -envelope protein e | envelope protein e, envelope protein eSAbDab (2026-04-17)
H [auth E],
J [auth S]
Light ChainIGKV3 Kappaenvelope protein e | envelope protein e, envelope protein eSAbDab (2026-04-17)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth T],
B [auth U],
C [auth V]
Small envelope protein M
G [auth D],
I [auth R]
Fab Heavy chain---
H [auth E],
J [auth S]
Fab light chain---
D [auth Q],
E [auth N],
F [auth K]
Envelope protein E

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth T],
B [auth U],
C [auth V]
IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR014756Immunoglobulin E-setHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR001122Capsid protein C, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR014412Genome polyprotein, FlavivirusFamily
A [auth T],
B [auth U],
C [auth V]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR026490mRNA cap 0/1 methyltransferaseDomain
A [auth T],
B [auth U],
C [auth V]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR001650Helicase, C-terminal domain-likeDomain
A [auth T],
B [auth U],
C [auth V]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
A [auth T],
B [auth U],
C [auth V]
IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR000752Flavivirus non-structural protein NS2ADomain
A [auth T],
B [auth U],
C [auth V]
IPR047530RNA-dependent RNA polymerase, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
A [auth T],
B [auth U],
C [auth V]
IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
A [auth T],
B [auth U],
C [auth V]
IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR000069Envelope glycoprotein M, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
A [auth T],
B [auth U],
C [auth V]
IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR000404Flavivirus non-structural protein NS4ADomain
A [auth T],
B [auth U],
C [auth V]
IPR000487Non-structural protein NS2B, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR001528Flavivirus non-structural protein NS4BDomain
A [auth T],
B [auth U],
C [auth V]
IPR001157Non-structural protein NS1, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
A [auth T],
B [auth U],
C [auth V]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth T],
B [auth U],
C [auth V]
IPR002535Flavivirus polyprotein propeptideDomain
A [auth T],
B [auth U],
C [auth V]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth Q],
E [auth N],
F [auth K]
IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR014756Immunoglobulin E-setHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR001122Capsid protein C, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR014412Genome polyprotein, FlavivirusFamily
D [auth Q],
E [auth N],
F [auth K]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR026490mRNA cap 0/1 methyltransferaseDomain
D [auth Q],
E [auth N],
F [auth K]
IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR001650Helicase, C-terminal domain-likeDomain
D [auth Q],
E [auth N],
F [auth K]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
D [auth Q],
E [auth N],
F [auth K]
IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR000752Flavivirus non-structural protein NS2ADomain
D [auth Q],
E [auth N],
F [auth K]
IPR047530RNA-dependent RNA polymerase, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
D [auth Q],
E [auth N],
F [auth K]
IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
D [auth Q],
E [auth N],
F [auth K]
IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR000069Envelope glycoprotein M, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
D [auth Q],
E [auth N],
F [auth K]
IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR000404Flavivirus non-structural protein NS4ADomain
D [auth Q],
E [auth N],
F [auth K]
IPR000487Non-structural protein NS2B, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR001528Flavivirus non-structural protein NS4BDomain
D [auth Q],
E [auth N],
F [auth K]
IPR001157Non-structural protein NS1, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
D [auth Q],
E [auth N],
F [auth K]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth Q],
E [auth N],
F [auth K]
IPR002535Flavivirus polyprotein propeptideDomain
D [auth Q],
E [auth N],
F [auth K]
IPR007094RNA-directed RNA polymerase, catalytic domainDomain