7C7X | pdb_00007c7x

Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth F]	d7c7xf_	Alpha and beta proteins (a+b)	NAP-like	NAP-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
C [auth E]	d7c7xe1	Alpha and beta proteins (a+b)	NAP-like	NAP-like	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
C [auth E]	d7c7xe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
F [auth B]	d7c7xb_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B [auth D]	d7c7xd_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
E [auth A]	d7c7xa_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A [auth C]	d7c7xc_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth F]	SCOP2B Superfamily	NAP-like	8084148	3000895	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	NAP-like	8084148	3000895	SCOP2B (2022-06-29)
F [auth B]	SCOP2 Family	Nucleosome core histones	8101746	4000793	SCOP2 (2022-06-29)
F [auth B]	SCOP2 Superfamily	Core histone-like	8101747	3001387	SCOP2 (2022-06-29)
B [auth D]	SCOP2B Superfamily	Core histone-like	8101747	3001387	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Core histone-like	8101745	3001387	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	Core histone-like	8101745	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]		e7c7xF1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)
C [auth E]		e7c7xE1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)
F [auth B]		e7c7xB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)
B [auth D]		e7c7xD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)
E [auth A]		e7c7xA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)
A [auth C]		e7c7xC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: GramPos_pilinD1	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth E], D [auth F]	PF00956	Nucleosome assembly protein (NAP) (NAP)	Nucleosome assembly protein (NAP)	-	Family
A [auth C], E [auth A]	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth E], D [auth F]	NAP1-related protein 1	chromatin binding binding protein binding histone binding	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization nucleobase-containing compound metabolic process protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization nucleobase-containing compound metabolic process somatic cell DNA recombination DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B [auth D], F [auth B]	Histone H2B.1	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle plastid cytoplasm protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle plastid cytoplasm intracellular membrane-bounded organelle chloroplast extracellular region nucleus
A [auth C], E [auth A]	Histone H2A.6	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	DNA-mediated transformation horizontal gene transfer cellular process response to stimulus response to stress response to wounding biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus regulation of cellular process negative regulation of biological process DNA-mediated transformation horizontal gene transfer cellular process response to stimulus response to stress response to wounding biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen plastid cytoplasm protein-containing complex protein-DNA complex nucleosome chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E], D [auth F]	IPR037231	NAP-like superfamily	Homologous Superfamily
C [auth E], D [auth F]	IPR002164	Nucleosome assembly protein	Family
B [auth D], F [auth B]	IPR009072	Histone-fold	Homologous Superfamily
B [auth D], F [auth B]	IPR055333	Histone H2B, conserved site	Conserved Site
B [auth D], F [auth B]	IPR000558	Histone H2B	Family
B [auth D], F [auth B]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A [auth C], E [auth A]	IPR009072	Histone-fold	Homologous Superfamily
A [auth C], E [auth A]	IPR002119	Histone H2A	Family
A [auth C], E [auth A]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A [auth C], E [auth A]	IPR032454	Histone H2A, C-terminal domain	Domain
A [auth C], E [auth A]	IPR032458	Histone H2A conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.