7BUB
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 6.5
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | PF07686 | e7bubG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth H] | PF07686 | e7bubH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth I] | PF07686 | e7bubI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth L] | PF07686 | e7bubL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth B] | PF02832 | e7bubB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
C [auth B] | PF00869 | e7bubB3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
C [auth B] | PF21659 | e7bubB2 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
E [auth A] | PF02832 | e7bubA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
E [auth A] | PF00869 | e7bubA1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
E [auth A] | PF21659 | e7bubA2 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
G [auth C] | PF02832 | e7bubC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
G [auth C] | PF00869 | e7bubC3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
G [auth C] | PF21659 | e7bubC1 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
D [auth E] | PF01004 | e7bubE1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
F [auth D] | PF01004 | e7bubD1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
H [auth F] | PF01004 | e7bubF1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth G], I [auth H] | Fab SIgN-3C, anti-DEN, neutralizing | VH | - | IGHV1-46*01, IGHV1-46*03, IGHJ5*02 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202422-0) |
B [auth I], J [auth L] | Fab SIgN-3C, anti-DEN, neutralizing | V-KAPPA | - | IGKV1-33*01, IGKV1D-33*01, IGKJ5*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202422-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth G], I [auth H] | Heavy Chain | IGHV1 | - | dengue virus serotype2 e protein, dengue virus serotype2 e protein | dengue virus serotype2 e protein | SAbDab (2024-06-07) |
B [auth I], J [auth L] | Light Chain | IGKV1 | Kappa | dengue virus serotype2 e protein, dengue virus serotype2 e protein | dengue virus serotype2 e protein | SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth B], E [auth A], G [auth C] | PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | - | Domain |
C [auth B], E [auth A], G [auth C] | PF21659 | Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem) | Flavivirus envelope glycoprotein E, stem/anchor domain | This entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. | Domain |
C [auth B], E [auth A], G [auth C] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
D [auth E], F [auth D], H [auth F] | PF01004 | Flavivirus envelope glycoprotein M (Flavi_M) | Flavivirus envelope glycoprotein M | - | Family |