Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (dimeric, composite structure)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| S [auth d] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8105473 | 3001453 | SCOP2B (2022-06-29) |
| F [auth D] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8105473 | 3001453 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| V [auth g] | Lant_dehydr_C | e7bkcg1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| I [auth G] | Lant_dehydr_C | e7bkcG1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| U [auth l] | Lant_dehydr_C | e7bkcl1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| H [auth L] | Lant_dehydr_C | e7bkcL1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| T [auth i] | Lant_dehydr_C | e7bkci1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| G [auth I] | Lant_dehydr_C | e7bkcI1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| S [auth d] | Lant_dehydr_C | e7bkcd1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| F [auth D] | Lant_dehydr_C | e7bkcD1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| R [auth b] | Lant_dehydr_C | e7bkcb1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| E [auth B] | Lant_dehydr_C | e7bkcB1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| Q [auth c] | Lant_dehydr_C | e7bkcc1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| D [auth C] | Lant_dehydr_C | e7bkcC1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| O [auth f] | Lant_dehydr_C | e7bkcf1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| B [auth F] | Lant_dehydr_C | e7bkcF1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| Z [auth h] | Lant_dehydr_C | e7bkch1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| M [auth H] | Lant_dehydr_C | e7bkcH1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| Y [auth k] | Polycystin_dom | e7bkck1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Polycystin_dom | ECOD (develop294) |
| X [auth m] | Lant_dehydr_C | e7bkcm1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| L [auth K] | Polycystin_dom | e7bkcK1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Polycystin_dom | ECOD (develop294) |
| K [auth M] | Lant_dehydr_C | e7bkcM1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| W [auth j] | Lant_dehydr_C | e7bkcj1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| J | Lant_dehydr_C | e7bkcJ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Lant_dehydr_C | ECOD (develop294) |
| N [auth a] | NDUS4 | e7bkca1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: NDUS4 | ECOD (develop294) |
| A | NDUS4 | e7bkcA1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: NDUS4 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| S [auth d] | 3.40.228.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dimethylsulfoxide Reductase | domain 2 | CATH (utative) |
| F [auth D] | 3.40.228.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dimethylsulfoxide Reductase | domain 2 | CATH (utative) |
| R [auth b] | 1.20.1050.140 | Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi) | Chain A, domain 2 | CATH (utative) |
| E [auth B] | 1.20.1050.140 | Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi) | Chain A, domain 2 | CATH (utative) |
| Q [auth c] | 1.10.1060.10 | Mainly Alpha | Orthogonal Bundle | Fumarate Reductase Iron-sulfur Protein | Chain B, domain 2 | CATH (utative) |
| D [auth C] | 1.10.1060.10 | Mainly Alpha | Orthogonal Bundle | Fumarate Reductase Iron-sulfur Protein | Chain B, domain 2 | CATH (utative) |
| N [auth a] | 3.30.70.20 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) | |
| A | 3.30.70.20 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth G], V [auth g] | PF07969 | Amidohydrolase family (Amidohydro_3) | Amidohydrolase family | Domain | |
| H [auth L], U [auth l] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| F [auth D], S [auth d] | PF04879 | Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4) | Molybdopterin oxidoreductase Fe4S4 domain | This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. | Domain |
| F [auth D], S [auth d] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | Domain | |
| E [auth B], R [auth b] | PF02754 | Cysteine-rich domain (CCG) | Cysteine-rich domain | The key element of this domain is the CX31-38CCX33-34CXXC sequence motif normally found at the C-terminus in archaeal and bacterial Hdr-like proteins [2]. There may be one or two copies, and the motif is probably an iron-sulfur binding cluster. In so ... | Domain |
| D [auth C], Q [auth c] | PF13183 | 4Fe-4S dicluster domain (Fer4_8) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| C [auth E], P [auth e] | PF04422 | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term (FrhB_FdhB_N) | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term | - | Family |
| C [auth E], P [auth e] | PF04432 | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus (FrhB_FdhB_C) | Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus | Coenzyme F420 hydrogenase (EC:1.12.99.1) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C termini of F420 hydrogenase and dehydrogenase beta subunits [1], [2]. The N terminus of Methanobacterium formicicum fo ... | Domain |
| B [auth F], O [auth f] | PF02662 | Methyl-viologen-reducing hydrogenase, delta subunit (FlpD) | Methyl-viologen-reducing hydrogenase, delta subunit | - | Family |
| M [auth H], Z [auth h] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | Domain | |
| K [auth M], L [auth K], X [auth m], Y [auth k] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| J, W [auth j] | PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entire s ... | Domain |
| A, N [auth a] | PF12831 | FAD dependent oxidoreductase (FAD_oxidored) | FAD dependent oxidoreductase | - | Family |
| A, N [auth a] | PF13187 | 4Fe-4S dicluster domain (Fer4_9) | 4Fe-4S dicluster domain | - | Family |
| A, N [auth a] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |














