7BGE | pdb_00007bge

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth g]	SCOP2B Superfamily	Ribosomal protein S7	8066031	3000799	SCOP2B (2022-06-29)
E [auth i]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8082669	3000100	SCOP2B (2022-06-29)
F [auth j]	SCOP2B Superfamily	Ribosomal protein S10	8100362	3001336	SCOP2B (2022-06-29)
I [auth s]	SCOP2B Superfamily	Ribosomal protein S19	8086064	3000686	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth b]	Ribosomal_S2	e7bgeb1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: Ribosomal_S2	ECOD (1.6)
C [auth c]	Ribosomal_S3_C	e7bgec1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: Ribosomal_S3_C	ECOD (1.6)
C [auth c]	KH_2_1	e7bgec2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: KH_2_1	ECOD (1.6)
D [auth g]	Ribosomal_S7_1	e7bgeg1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: Ribosomal_S7_1	ECOD (1.6)
E [auth i]	Ribosomal_S9	e7bgei1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S9	ECOD (1.6)
F [auth j]	Ribosomal_S10	e7bgej1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: Ribosomal_S10	ECOD (1.6)
G [auth m]	Ribosomal_S13_1	e7bgem1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: Ribosomal_S13_1	ECOD (1.6)
H [auth n]	Ribosomal_S14	e7bgen1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_S14	ECOD (1.6)
I [auth s]	Ribosomal_S19	e7bges1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: Ribosomal_S19	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth a]	16S ribosomal RNA	-	-	-
B [auth b]	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
C [auth c]	30S ribosomal protein S3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
D [auth g]	30S ribosomal protein S7	RNA binding binding nucleic acid binding mRNA binding rRNA binding tRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
E [auth i]	30S ribosomal protein S9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
F [auth j]	30S ribosomal protein S10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
G [auth m]	30S ribosomal protein S13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
H [auth n]	30S ribosomal protein S14 type Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
I [auth s]	30S ribosomal protein S19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth b]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
B [auth b]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
B [auth b]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
B [auth b]	IPR001865	Small ribosomal subunit protein uS2	Family
C [auth c]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
C [auth c]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
C [auth c]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
C [auth c]	IPR004087	K Homology domain	Domain
C [auth c]	IPR004044	K Homology domain, type 2	Domain
C [auth c]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
C [auth c]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
C [auth c]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
D [auth g]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
D [auth g]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
D [auth g]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
D [auth g]	IPR000235	Small ribosomal subunit protein uS7	Family
D [auth g]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
E [auth i]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
E [auth i]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
E [auth i]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth i]	IPR000754	Small ribosomal subunit protein uS9	Family
E [auth i]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
F [auth j]	IPR001848	Small ribosomal subunit protein uS10	Family
F [auth j]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
F [auth j]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
F [auth j]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
G [auth m]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
G [auth m]	IPR001892	Small ribosomal subunit protein uS13	Family
G [auth m]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
G [auth m]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
G [auth m]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
H [auth n]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
H [auth n]	IPR001209	Small ribosomal subunit protein uS14	Family
H [auth n]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
H [auth n]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
I [auth s]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
I [auth s]	IPR002222	Small ribosomal subunit protein uS19	Family
I [auth s]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
I [auth s]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site