7AR8 | pdb_00007ar8

Cryo-EM structure of Arabidopsis thaliana complex-I (closed conformation)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IDynamin_Ne7ar8I1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
HDynamin_Ne7ar8H1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
GDynamin_Ne7ar8G1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
FDynamin_Ne7ar8F1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
EDynamin_Ne7ar8E1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
UA [auth z]MIFe7ar8z1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MIFECOD (v295.2)
TA [auth y]MIFe7ar8y1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MIFECOD (v295.2)
SA [auth x]Dynamin_Ne7ar8x1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
OA [auth q]Ion_transe7ar8q1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ion_transECOD (v295.2)
DIon_transe7ar8D1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ion_transECOD (v295.2)
LA [auth n]NDUS4e7ar8n1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: NDUS4ECOD (v295.2)
HA [auth j]Dynamin_Ne7ar8j1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
DA [auth e]Dynamin_Ne7ar8e1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
CDynamin_Ne7ar8C1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
Z [auth a]Dynamin_Ne7ar8a1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
Y [auth Z]Dynamin_Ne7ar8Z1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
XDynamin_Ne7ar8X1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
WDynamin_Ne7ar8W1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
VMIFe7ar8V1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MIFECOD (v295.2)
UDynamin_Ne7ar8U1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
TDynamin_Ne7ar8T1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
BDynamin_Ne7ar8B1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
SDynamin_Ne7ar8S1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
RDynamin_Ne7ar8R1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
QDynamin_Ne7ar8Q1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
PDynamin_Ne7ar8P1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
ODynamin_Ne7ar8O1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
NDynamin_Ne7ar8N1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
MDynamin_Ne7ar8M1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
LDynamin_Ne7ar8L1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
KDynamin_Ne7ar8K1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
JDynamin_Ne7ar8J1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)
ADynamin_Ne7ar8A1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Dynamin_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
UA [auth z]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (utative)
D1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
K1.10.287.3510 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial
NADH-ubiquinone oxidoreductase chain 1 -
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
UA [auth z]Gamma carbonic anhydrase 1, mitochondrial
TA [auth y]Gamma carbonic anhydrase 2, mitochondrial
SA [auth x]Gamma carbonic anhydrase-like 2, mitochondrial-
RA [auth v]Uncharacterized protein At2g27730, mitochondrial
QA [auth u]unknown---
PA [auth r]Furry- - -
OA [auth q]Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 -
NA [auth p]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-
NADH dehydrogenase subunit 7---
MA [auth o]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-
LA [auth n]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-
KA [auth m]B15 -- 1 beta subcomplex subunit 4---
JA [auth l]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial- -
IA [auth k]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A-
HA [auth j]NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2- -
GA [auth i]P1---
FA [auth g]ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein- - -
EA [auth f]At4g16450- - -
DA [auth e]NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 -
CA [auth d]Excitatory amino acid transporter- - -
BA [auth c]Transmembrane protein- - -
AA [auth b]At2g46540/F11C10.23- - -
Z [auth a]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1- -
Y [auth Z]NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A-
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6- -
Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial-
Acyl carrier protein 2, mitochondrial
Acyl carrier protein 1, mitochondrial
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2- -
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
AT3G07480.1---
NADH-ubiquinone oxidoreductase chain 2
NADH-ubiquinone oxidoreductase chain 4
NADH-ubiquinone oxidoreductase chain 5
NADH dehydrogenase subunit 4L---
NADH-ubiquinone oxidoreductase chain 6---
NADH-ubiquinone oxidoreductase chain 3 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR010226NADH-quinone oxidoreductase, chain IFamily
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
IPR015405NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-likeDomain
IPR006656Molybdopterin oxidoreductaseDomain
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
IPR010228NADH:ubiquinone oxidoreductase, subunit GFamily
IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
IPR054765SLBB domainDomain
IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
IPR050837Complex I 51 kDa subunitFamily
IPR042128NuoE domainDomain
IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
UA [auth z]IPR060273Gamma carbonic anhydrase 1, C-terminal domainDomain
UA [auth z]IPR047324Gamma carbonic anhydrase-likeFamily
UA [auth z]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
UA [auth z]IPR050484Transferase Hexapeptide/Carbonic AnhydraseFamily
TA [auth y]IPR060273Gamma carbonic anhydrase 1, C-terminal domainDomain
TA [auth y]IPR047324Gamma carbonic anhydrase-likeFamily
TA [auth y]IPR001451Hexapeptide repeatRepeat
TA [auth y]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
TA [auth y]IPR050484Transferase Hexapeptide/Carbonic AnhydraseFamily
SA [auth x]IPR047324Gamma carbonic anhydrase-likeFamily
SA [auth x]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
SA [auth x]IPR050484Transferase Hexapeptide/Carbonic AnhydraseFamily
RA [auth v]IPR045284At2g27730-likeFamily
OA [auth q]IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12Family
NA [auth p]IPR019377NADH-ubiquinone oxidoreductase, subunit 10Family
NA [auth p]IPR039993NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10Family
MA [auth o]IPR008698NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NDUB7Family
LA [auth n]IPR033034NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9Family
LA [auth n]IPR045292NDUFB9, LYR domainDomain
JA [auth l]IPR038863Putative NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialFamily
IA [auth k]IPR012576NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3Family
HA [auth j]IPR044980NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, plant/fungiFamily
EA [auth f]IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalDomain
EA [auth f]IPR053229NADH-ubiquinone oxidoreductase subunitFamily
DA [auth e]IPR019342NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5Family
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
IPR010218NADH dehydrogenase, subunit CFamily
CA [auth d]IPR063519NDUC2 subunitFamily
AA [auth b]IPR059243At2g46540-likeFamily
Z [auth a]IPR017384NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1Family
Y [auth Z]IPR009346GRIM-19Family
IPR010625CHCHDomain
IPR016680NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8Family
IPR016488NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6Family
IPR045299NDUFA6, LYR domainDomain
IPR006806NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5Family
IPR006162Phosphopantetheine attachment sitePTM
IPR009081Phosphopantetheine binding ACP domainDomain
IPR036736ACP-like superfamilyHomologous Superfamily
IPR003231Acyl carrier proteinFamily
IPR006162Phosphopantetheine attachment sitePTM
IPR009081Phosphopantetheine binding ACP domainDomain
IPR036736ACP-like superfamilyHomologous Superfamily
IPR003231Acyl carrier proteinFamily
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR016464NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2Family
IPR019401Zinc finger, CHCC-typeDomain
IPR016668NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialFamily
IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyHomologous Superfamily
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-likeFamily
IPR051207Mitochondrial Complex I NDUFA9 SubunitFamily
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR001509NAD-dependent epimerase/dehydrataseDomain
IPR010096NAD(P)H-quinone oxidoreductase, subunit N/subunit 2Family
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
IPR003918NADH:ubiquinone oxidoreductaseFamily
IPR010227NADH-quinone oxidoreductase, chain M/4Family
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
IPR010934NADH dehydrogenase subunit 5, C-terminalDomain
IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidFamily
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily