7AIH | pdb_00007aih

The Large subunit of the Kinetoplastid mitochondrial ribosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
HA [auth BI]	SCOP2 Family	Cyclophilin peptidylprolyl isomerase-like	8103167	4000390	SCOP2 (2022-06-29)
HA [auth BI]	SCOP2 Superfamily	Cyclophilin-like	8103168	3000168	SCOP2 (2022-06-29)
UA [auth BH]	SCOP2 Family	Cyclophilin peptidylprolyl isomerase-like	8103169	4000390	SCOP2 (2022-06-29)
UA [auth BH]	SCOP2 Superfamily	Cyclophilin-like	8103170	3000168	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Ribosomal_L21p	e7aihE01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
W	SBP_bac_1	e7aihW1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
HA [auth BI]	SBP_bac_1	e7aihBI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
EB [auth As]		e7aihAs1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
I	Ribosomal_L21p	e7aihI01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
H	SBP_bac_1	e7aihH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
G	Ribosomal_L21p	e7aihG01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
OB [auth BG]	SBP_bac_1	e7aihBG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
NB [auth BO]		e7aihBO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
MB [auth BL]	Ribosomal_L21p	e7aihBL01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
LB [auth Ax]	Ribosomal_L21p	e7aihAx01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
F	SBP_bac_1	e7aihF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
GB [auth Ac]	SBP_bac_1	e7aihAc1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
AB [auth Ad]	V-set	e7aihAd1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
YA [auth Ak]	CoA_binding_2	e7aihAk1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: CoA_binding_2	ECOD (v295.2)
VA [auth Am]	SBP_bac_1	e7aihAm1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
UA [auth BH]	SBP_bac_1	e7aihBH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
MA [auth Ai]	SBP_bac_1	e7aihAi1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
LA [auth Ab]	Ribosomal_L21p	e7aihAb01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
AA [auth BA]	SBP_bac_1	e7aihBA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
U	SBP_bac_1	e7aihU1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
T	Ion_trans	e7aihT1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Ion_trans	ECOD (v295.2)
Q		e7aihQ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F:	ECOD (v295.2)
N		e7aihN01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F:	ECOD (v295.2)
L	Ribosomal_L21p	e7aihL01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
K	Ribosomal_L21p	e7aihK01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)
A	Ribosomal_L21p	e7aihA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L21p	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E	PF03946	Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)	Ribosomal protein L11, N-terminal domain	The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.	Domain
E	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain		Domain
HA [auth BI]	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].	Domain
I	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
H	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e		Domain
G	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.	Domain
NB [auth BO]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain
MB [auth BL]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain		Domain
F	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
UA [auth BH]	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...	The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].	Domain
C	PF01281	Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)	Ribosomal protein L9, N-terminal domain		Domain
B	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
R	PF06984	Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)	-	Family
M	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
L	PF00829	Ribosomal prokaryotic L21 protein (Ribosomal_L21p)	Ribosomal prokaryotic L21 protein	-	Family
A	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	Putative ribosomal protein L11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
W	bL36m	-	-	-
BA [auth UA]	UA	-	-	-
GA [auth Al]	mL74	-	-	-
HA [auth BI]	Peptidyl-prolyl cis-trans isomerase	binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection intracellular organelle nucleus intracellular membrane-bounded organelle
OA [auth Au]	mL87	-	-	-
TA [auth Aj]	mL72	-	-	-
EB [auth As]	mL85	-	-	-
I	Putative 50S ribosomal protein L17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
H	Ribosomal_L16 domain-containing protein	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
SB [auth 1]	Ribosomal RNA	-	-	-
RB [auth UD]	UD	-	-	-
G	Ribosomal_L18e/L15P domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
QB [auth UC]	UC	-	-	-
PB [auth UB]	UB	-	-	-
OB [auth BG]	mL100	-	-	-
NB [auth BO]	Putative ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
MB [auth BL]	Putative ribosomal protein L2	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
LB [auth Ax]	LIM zinc-binding domain-containing protein	-	-	-
KB [auth Ag]	mL54/69	-	-	-
JB [auth Ay]	C2H2-type domain-containing protein	-	-	-
IB [auth BD]	mL97	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
HB [auth Ah]	mL68	-	-	-
F	50S ribosomal protein L13-like protein	structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex mitochondrial large ribosomal subunit membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle organelle lumen ribonucleoprotein complex
GB [auth Ac]	MRP-L46 domain-containing protein	structural molecule activity structural constituent of ribosome	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
FB [auth Ae]	mL53	-	-	-
DB [auth Af]	mL63	-	-	-
CB [auth Av]	mL88	-	-	-
BB [auth BF]	mL99	-	-	-
AB [auth Ad]	mL49	-	-	-
ZA [auth BP]	mL52,mL52	-	-	-
YA [auth Ak]	mL73	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
XA [auth BE]	mL98	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
WA [auth Aq]	mL82	-	-	-
VA [auth Am]	mL75	RNA binding binding nucleic acid binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm
UA [auth BH]	Peptidyl-prolyl cis-trans isomerase	binding cyclosporin A binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection intracellular organelle nucleus intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection intracellular organelle nucleus intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen
SA [auth Ar]	mL84	-	-	-
RA [auth BM]	mL70	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
QA [auth Ao]	mL79	-	-	-
PA [auth Aa]	mL42	-	-	-
NA [auth Ap]	mL80	-	-	-
D	uL10m	-	-	-
MA [auth Ai]	mL69	CoA-ligase activity fatty acid ligase activity ligase activity, forming carbon-sulfur bonds medium-chain fatty acid-CoA ligase activity fatty acid-CoA ligase activity catalytic activity acid-thiol ligase activity ligase activity ATP-dependent activity	-	-
LA [auth Ab]	L51_S25_CI-B8 domain-containing protein	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
KA [auth BC]	mL96	-	-	-
JA [auth At]	mL86	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
IA [auth Az]	mL93	-	-	-
FA [auth An]	mL76	-	-	-
EA [auth Bj]	bL31m	-	-	-
DA [auth Aw]	mL89	-	-	-
C	RIBOSOMAL_L9 domain-containing protein	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection ciliary plasm cilium plasma membrane bounded cell projection nucleus membrane-enclosed lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection ciliary plasm cilium plasma membrane bounded cell projection nucleus membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen
CA [auth BB]	mL95	-	-	-
AA [auth BA]	mL94	-	-	-
Z	mL41	-	-	-
Y	mL40	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
X	mL38	-	-	-
V	bL35m	-	-	-
U	bL33m	-	-	-
T	bL32m	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B	uL4m	structural molecule activity structural constituent of ribosome	regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
S	uL30m	-	-	-
R	uL29m	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix membrane-bounded organelle cell projection cellular anatomical structure intracellular anatomical structure ciliary plasm organelle cilium cytoplasm plasma membrane bounded cell projection protein-containing complex mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen ribonucleoprotein complex nucleus nuclear lumen
Q	bL28m	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
P	bL27m	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
O	uL24m	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle ribosome
N	uL23m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
M	uL22m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
L	bL21m	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
K	bL20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast mitochondrial ribosome membrane-enclosed lumen intracellular membraneless organelle mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast mitochondrial ribosome membrane-enclosed lumen intracellular membraneless organelle mitochondrial matrix intracellular organelle lumen organellar ribosome organelle lumen membraneless organelle ribosome protein-containing complex ribosomal subunit ribonucleoprotein complex large ribosomal subunit
J	bL19m	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
A	Ribosomal protein L3-like protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrial large ribosomal subunit mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle ribosome large ribosomal subunit organellar large ribosomal subunit mitochondrial protein-containing complex mitochondrial ribosome intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
E	IPR000911	Ribosomal protein uL11	Family
E	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
E	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
E	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
HA [auth BI]	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
HA [auth BI]	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
TA [auth Aj]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
I	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
I	IPR000456	Large ribosomal subunit protein bL17	Family
H	IPR000114	Large ribosomal subunit protein uL16, bacteria	Family
H	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
H	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
H	IPR047873	Large ribosomal subunit protein uL16	Family
G	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
G	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
G	IPR005749	Large ribosomal subunit protein uL15, bacteria	Family
NB [auth BO]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
NB [auth BO]	IPR000218	Large ribosomal subunit protein uL14	Family
MB [auth BL]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
MB [auth BL]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
MB [auth BL]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
MB [auth BL]	IPR002171	Large ribosomal subunit protein uL2	Family
LB [auth Ax]	IPR001781	Zinc finger, LIM-type	Domain
JB [auth Ay]	IPR013087	Zinc finger C2H2-type	Domain
JB [auth Ay]	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
F	IPR005822	Large ribosomal subunit protein uL13	Family
F	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
GB [auth Ac]	IPR021757	Large ribosomal subunit protein mL46, N-terminal	Domain
GB [auth Ac]	IPR040008	Large ribosomal subunit protein mL46	Family
YA [auth Ak]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
VA [auth Am]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
VA [auth Am]	IPR002885	Pentatricopeptide repeat	Repeat
UA [auth BH]	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
UA [auth BH]	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
UA [auth BH]	IPR020892	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Conserved Site
MA [auth Ai]	IPR000873	AMP-dependent synthetase/ligase domain	Domain
LA [auth Ab]	IPR007741	Ribosomal protein/NADH dehydrogenase domain	Domain
LA [auth Ab]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
LA [auth Ab]	IPR039927	Large ribosomal subunit protein mL43	Family
KA [auth BC]	IPR059194	Ribosomal protein mL96-like	Family
C	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
X	IPR036610	PEBP-like superfamily	Homologous Superfamily
X	IPR035810	Phosphatidylethanolamine-binding protein, eukaryotic	Family
U	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
B	IPR013005	Large ribosomal subunit protein uL4-like	Family
B	IPR002136	Large ribosomal subunit protein uL4	Family
B	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
S	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
R	IPR038340	MRP-L47 superfamily, mitochondrial	Homologous Superfamily
R	IPR010729	Large ribosomal subunit protein uL29m, mitochondrial	Family
Q	IPR026569	Large ribosomal subunit protein bL28	Family
O	IPR003256	Large ribosomal subunit protein uL24	Family
O	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
O	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
O	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
O	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
N	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
N	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
N	IPR013025	Large ribosomal subunit protein uL23-like	Family
M	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
M	IPR001063	Large ribosomal subunit protein uL22	Family
M	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
L	IPR028909	Large ribosomal subunit protein bL21-like	Family
L	IPR001787	Large ribosomal subunit protein bL21	Family
L	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
K	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
K	IPR005813	Large ribosomal subunit protein bL20	Family
A	IPR019927	Large ribosomal subunit protein uL3, bacteria/organella	Family
A	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
A	IPR000597	Large ribosomal subunit protein uL3	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.